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Sample GSM1185602 Query DataSets for GSM1185602
Status Public on Aug 07, 2013
Title 7.25 PMN
Sample type genomic
 
Source name Bone marrow cells
Organism Homo sapiens
Characteristics cell type: Polymorphonuclear granulocytes
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label Cy5 and Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Normal human bone marrow cells
Data processing Background corrected against out-of-band signals and dye bias corrected against Illumina internal controls
 
Submission date Jul 12, 2013
Last update date Aug 08, 2013
Contact name Peter W. Laird
Organization name USC/Norris Cancer Center
Department USC Epigenome Center
Lab Laird
Street address 1450 Biggy St.
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE49618 Sorted normal bone marrow cells from healthy volunteers at Washington University

Data table header descriptions
ID_REF Illumina ID
VALUE Beta-value
RAW_VALUE raw Beta-value
METHYLATED the methylated probe intensity
UNMETHYLATED the unmethylated probe intensity
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE METHYLATED UNMETHYLATED Detection_Pval
cg00000029 0.53035 0.59884 5147 3448 0
cg00000108 0.94588 0.93228 14454 1050 0
cg00000109 0.91477 0.90538 6583 688 0
cg00000165 0.11994 0.22572 1278 4384 0
cg00000236 0.72481 0.74601 6682 2275 0
cg00000289 0.63057 0.66693 1702 850 0
cg00000292 0.84831 0.85525 13253 2243 0
cg00000321 0.16309 0.25169 2648 7873 0
cg00000363 0.29639 0.38741 6961 11007 0
cg00000622 0.015079 0.0099742 170 16874 0
cg00000658 0.8309 0.84022 12011 2284 0
cg00000714 0.15887 0.23001 5515 18462 0
cg00000721 0.94205 0.93798 8862 586 0
cg00000734 0.056869 0.11654 1586 12023 0
cg00000769 0.043998 0.072503 1215 15543 0
cg00000807 0.84871 0.86632 19202 2963 0
cg00000884 0.9292 0.92893 6967 533 0
cg00000905 0.050733 0.1125 791 6240 0
cg00000924 0.4513 0.54109 11075 9393 0
cg00000948 0.92205 0.90788 13325 1352 0

Total number of rows: 485577

Table truncated, full table size 18771 Kbytes.




Supplementary file Size Download File type/resource
GSM1185602_7796806148_R03C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1185602_7796806148_R03C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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