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Sample GSM1185593 Query DataSets for GSM1185593
Status Public on Aug 07, 2013
Title 9.1 PMN
Sample type genomic
 
Source name Bone marrow cells
Organism Homo sapiens
Characteristics cell type: Polymorphonuclear granulocytes
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label Cy5 and Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Normal human bone marrow cells
Data processing Background corrected against out-of-band signals and dye bias corrected against Illumina internal controls
 
Submission date Jul 12, 2013
Last update date Aug 08, 2013
Contact name Peter W. Laird
Organization name USC/Norris Cancer Center
Department USC Epigenome Center
Lab Laird
Street address 1450 Biggy St.
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE49618 Sorted normal bone marrow cells from healthy volunteers at Washington University

Data table header descriptions
ID_REF Illumina ID
VALUE Beta-value
RAW_VALUE raw Beta-value
METHYLATED the methylated probe intensity
UNMETHYLATED the unmethylated probe intensity
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE METHYLATED UNMETHYLATED Detection_Pval
cg00000029 0.45664 0.54229 1949 1645 0
cg00000108 0.95979 0.94339 10983 659 0
cg00000109 0.87686 0.84633 3982 723 0
cg00000165 0.11806 0.25727 955 2757 0
cg00000236 0.75546 0.73709 2540 906 0
cg00000289 0.47013 0.57422 824 611 0
cg00000292 0.88159 0.86729 7463 1142 0
cg00000321 0.24183 0.34656 3458 6520 0
cg00000363 0.39031 0.4951 7370 7516 0
cg00000622 0.018111 0.038212 531 13365 0
cg00000658 0.92296 0.8985 5453 616 0
cg00000714 0.14156 0.21784 4331 15551 0
cg00000721 0.929 0.91227 4898 471 0
cg00000734 0.080284 0.15115 1883 10575 0
cg00000769 0.019858 0.044134 530 11479 0
cg00000807 0.90335 0.90805 16393 1660 0
cg00000884 0.93181 0.92298 4590 383 0
cg00000905 0.060056 0.16393 788 4019 0
cg00000924 0.3509 0.456 6934 8272 0
cg00000948 0.93515 0.91812 10910 973 0

Total number of rows: 485577

Table truncated, full table size 18589 Kbytes.




Supplementary file Size Download File type/resource
GSM1185593_6285625091_R06C02_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1185593_6285625091_R06C02_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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