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Sample GSM1185582 Query DataSets for GSM1185582
Status Public on Aug 07, 2013
Title 8.10 CD34
Sample type genomic
 
Source name Bone marrow cells
Organism Homo sapiens
Characteristics cell type: CD34+CD38- cells
Extracted molecule genomic DNA
Extraction protocol standard as recommended by illumina
Label Cy5 and Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Normal human bone marrow cells
Data processing Background corrected against out-of-band signals and dye bias corrected against Illumina internal controls
 
Submission date Jul 12, 2013
Last update date Aug 08, 2013
Contact name Peter W. Laird
Organization name USC/Norris Cancer Center
Department USC Epigenome Center
Lab Laird
Street address 1450 Biggy St.
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platform ID GPL13534
Series (1)
GSE49618 Sorted normal bone marrow cells from healthy volunteers at Washington University

Data table header descriptions
ID_REF Illumina ID
VALUE Beta-value
RAW_VALUE raw Beta-value
METHYLATED the methylated probe intensity
UNMETHYLATED the unmethylated probe intensity
Detection_Pval the detection p-value of the probe

Data table
ID_REF VALUE RAW_VALUE METHYLATED UNMETHYLATED Detection_Pval
cg00000029 0.5917 0.63038 2154 1263 0
cg00000108 0.95844 0.94414 9397 556 0
cg00000109 0.94092 0.95687 3727 168 0
cg00000165 0.15729 0.28316 777 1967 0
cg00000236 0.89247 0.86659 4021 619 0
cg00000289 0.56185 0.62878 791 467 0
cg00000292 0.88796 0.88217 8168 1091 0
cg00000321 0.2698 0.35905 2862 5109 0
cg00000363 0.34783 0.43573 5325 6896 0
cg00000622 0.01557 0.0193 199 10112 0
cg00000658 0.89407 0.8758 5902 837 0
cg00000714 0.21338 0.28888 4837 11907 0
cg00000721 0.9438 0.93054 5426 405 0
cg00000734 0.057715 0.11576 1033 7891 0
cg00000769 0.028132 0.056352 515 8624 0
cg00000807 0.83839 0.86086 13284 2147 0
cg00000884 0.92423 0.90383 4671 497 0
cg00000905 0.051588 0.1272 622 4268 0
cg00000924 0.40534 0.49282 6860 7060 0
cg00000948 0.9363 0.91888 8156 720 0

Total number of rows: 485577

Table truncated, full table size 18487 Kbytes.




Supplementary file Size Download File type/resource
GSM1185582_6285625091_R01C01_Grn.idat.gz 4.1 Mb (ftp)(http) IDAT
GSM1185582_6285625091_R01C01_Red.idat.gz 4.1 Mb (ftp)(http) IDAT
Processed data included within Sample table

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