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Sample GSM1179328 Query DataSets for GSM1179328
Status Public on Aug 26, 2013
Title Xpatid_175
Sample type genomic
 
Source name Glioma
Organism Homo sapiens
Characteristics os (years): 5.61
os event: deceased
pfs (years): 5.36
pfs event: prog
cimp: CIMP-
igs: 17
idh1: wt
1p19qloh: no loss
egfr: wt
mgmt: meth
or diagn: AOD
rev diagn: AOD
surgery: 3
age: 44
gender: F
tum loc: 1
perf: 0
trt: RT/PCV
Extracted molecule genomic DNA
Extraction protocol genomic DNA was isolated from 5-40 cryostat sections of 40 μm thickness using the QIAamp DNA mini kit
Label Cy5 and Cy3
Label protocol Standard Illumina Protocol
 
Hybridization protocol bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
Data processing Beadstudio
 
Submission date Jul 01, 2013
Last update date Aug 26, 2013
Contact name Pim French
E-mail(s) p.french@erasmusmc.nl
Phone +31 10 70443 33
Organization name Erasmus MC
Department Neurology
Lab Neurooncology
Street address Dr Molewaterplein 50
City Rotterdam
ZIP/Postal code 2040CA
Country Netherlands
 
Platform ID GPL13534
Series (2)
GSE48461 MGMT-STP27 methylation status as Predictive Marker for Response to PCV in Anaplastic Oligodendrogliomas and Oligoastrocytomas; A report from EORTC study 26951
GSE48462 MGMT-STP27 methylation status as Predictive Marker for Response to PCV in Anaplastic Oligodendrogliomas and Oligoastrocytomas. A report from EORTC study 26951

Data table header descriptions
ID_REF
VALUE Average Beta
Detection.Pval

Data table
ID_REF VALUE Detection.Pval
cg00000029 0.43785 0.03
cg00000108 0.89557 0
cg00000109 0.35504 0.11333
cg00000165 0.59153 0.00167
cg00000236 0.83728 0
cg00000289 0.5098 0.05
cg00000292 0.74252 0
cg00000321 0.49963 0
cg00000363 0.3119 0
cg00000622 0.09402 0
cg00000658 0.89305 0
cg00000714 0.14953 0
cg00000721 0.72352 0.00167
cg00000734 0.07193 0
cg00000769 0.07571 0
cg00000807 0.89501 0
cg00000884 0.58224 0.01167
cg00000905 0.22029 0.00333
cg00000924 0.79399 0
cg00000948 0.86116 0

Total number of rows: 485577

Table truncated, full table size 10692 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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