|
Status |
Public on Feb 03, 2015 |
Title |
023_Adenoma |
Sample type |
RNA |
|
|
Source name |
Colon primary tissue
|
Organism |
Homo sapiens |
Characteristics |
gender: Male patient: 023 tissue: adenoma tissue
|
Treatment protocol |
not applicable
|
Growth protocol |
not applicable
|
Extracted molecule |
total RNA |
Extraction protocol |
according to AllPrep kit from Qiagen
|
Label |
Biotin
|
Label protocol |
Standard Illumina protocol
|
|
|
Hybridization protocol |
Standard Illumina protocol
|
Scan protocol |
Standard Illumina protocol
|
Description |
Sample name: 023AD3 Patient 023 adenoma tissue
|
Data processing |
Summarised data were exported from BeadStudio without normalisation and imported into R. After removing arrays with poor signal-to-noise ratio, remaining arrays were background corrected and normalised using the neqc method in the limma Bioconductor package.
|
|
|
Submission date |
May 17, 2013 |
Last update date |
Sep 14, 2015 |
Contact name |
Chandra Chilamakuri |
E-mail(s) |
datasubmissions@cruk.cam.ac.uk
|
Organization name |
Cancer Research UK Cambridge Institute
|
Street address |
Robinson Way
|
City |
Cambridge |
ZIP/Postal code |
CB2 0RE |
Country |
United Kingdom |
|
|
Platform ID |
GPL6102 |
Series (2) |
GSE47063 |
5-hydroxymethylcytosine marks promoters in colon that resist hypermethylation in cancer [ExpressionArray] |
GSE47592 |
5-hydroxymethylcytosine marks promoters in colon that resist hypermethylation in cancer |
|