|
| Status |
Public on Feb 03, 2015 |
| Title |
001_Normal_Close |
| Sample type |
RNA |
| |
|
| Source name |
Colon primary tissue
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Male
patient: 001
tissue: normal tissues taken away (20cm) from the tumor
|
| Treatment protocol |
not applicable
|
| Growth protocol |
not applicable
|
| Extracted molecule |
total RNA |
| Extraction protocol |
according to AllPrep kit from Qiagen
|
| Label |
Biotin
|
| Label protocol |
Standard Illumina protocol
|
| |
|
| Hybridization protocol |
Standard Illumina protocol
|
| Scan protocol |
Standard Illumina protocol
|
| Description |
Sample name: 001NC
Patient 001 normal tissues taken close to tumor
|
| Data processing |
Summarised data were exported from BeadStudio without normalisation and imported into R. After removing arrays with poor signal-to-noise ratio, remaining arrays were background corrected and normalised using the neqc method in the limma Bioconductor package.
|
| |
|
| Submission date |
May 17, 2013 |
| Last update date |
Sep 14, 2015 |
| Contact name |
Chandra Chilamakuri |
| E-mail(s) |
datasubmissions@cruk.cam.ac.uk
|
| Organization name |
Cancer Research UK Cambridge Institute
|
| Street address |
Robinson Way
|
| City |
Cambridge |
| ZIP/Postal code |
CB2 0RE |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL6102 |
| Series (2) |
| GSE47063 |
5-hydroxymethylcytosine marks promoters in colon that resist hypermethylation in cancer [ExpressionArray] |
| GSE47592 |
5-hydroxymethylcytosine marks promoters in colon that resist hypermethylation in cancer |
|
