DNA from Buccal cells was extracted using the Gentra Puregene Buccal cell kit, USA. CD14 and CD34 cells were extracted using Qiagen QIAamp DNA Blood Mini Kit, Sperm was extracted by Qiagen QIAamp DNA Mini Kit, Placenta (Catalog number D1234200 from Biochain, USA) and Pancreas (Catalog number D1234188 from Biochain, USA) were commercial samples
Label
Cy5 and Cy3
Label protocol
Standard Illumina Protocol
Hybridization protocol
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting.
Description
Normal
Data processing
BeadStudio software, Custom R scripts for normalisation provided in supplementary of paper.