|
Status |
Public on Apr 04, 2013 |
Title |
genomic DNA extracted from TS603 maintained in DMSO for 2 passages Biological replicated 2 |
Sample type |
genomic |
|
|
Source name |
Oligodendroglioma
|
Organism |
Homo sapiens |
Characteristics |
mutation: R132H-IDH1 tissue: Oligodendroglioma treatment: DMSO
|
Extracted molecule |
genomic DNA |
Extraction protocol |
genomic DNA was extracted using Qiagen DNeasy Kit according to standard instructions
|
Label |
Cy5 and Cy3
|
Label protocol |
Standard Illumina Protocol
|
|
|
Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
Description |
methylation data in cell lines
|
Data processing |
BeadStudio software v3.2 was used to export data to Partek Genomics Suite Format
|
|
|
Submission date |
Mar 15, 2013 |
Last update date |
Apr 04, 2013 |
Contact name |
Daniel Rohle |
E-mail(s) |
rohled@mskcc.org
|
Organization name |
Memorial Sloan Kettering Cancer Center
|
Department |
The Human Oncology and Pathogenesis Program
|
Lab |
Ingo Mellinghoff Lab
|
Street address |
1275 York Avenue
|
City |
New York |
State/province |
NY |
ZIP/Postal code |
10065 |
Country |
USA |
|
|
Platform ID |
GPL13534 |
Series (2) |
GSE45199 |
An Inhibitor of Mutant IDH1 Delays Growth and Promotes Differentiation of Glioma Cells Methylation Data for In Vitro Model |
GSE45200 |
An Inhibitor of Mutant IDH1 Delays Growth and Promotes Differentiation of Glioma Cells |
|