|
| Status |
Public on Apr 04, 2013 |
| Title |
vehicle m4 |
| Sample type |
genomic |
| |
|
| Source name |
Oligodendroglioma
|
| Organism |
Homo sapiens |
| Characteristics |
mutation: R132H-IDH1
tissue: Oligodendroglioma
treatment: vehicle
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted using Qiagen DNeasy Kit according to standard instructions
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
genomic DNA from TS603 treated xenografts
methylation data in xenografts
|
| Data processing |
BeadStudio software v3.2 was used to export data to Partek Genomics Suite Format
|
| |
|
| Submission date |
Mar 15, 2013 |
| Last update date |
Apr 04, 2013 |
| Contact name |
Daniel Rohle |
| E-mail(s) |
rohled@mskcc.org
|
| Organization name |
Memorial Sloan Kettering Cancer Center
|
| Department |
The Human Oncology and Pathogenesis Program
|
| Lab |
Ingo Mellinghoff Lab
|
| Street address |
1275 York Avenue
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10065 |
| Country |
USA |
| |
|
| Platform ID |
GPL13534 |
| Series (2) |
| GSE45198 |
An Inhibitor of Mutant IDH1 Delays Growth and Promotes Differentiation of Glioma Cells Methylation Data for Xenograft Samples |
| GSE45200 |
An Inhibitor of Mutant IDH1 Delays Growth and Promotes Differentiation of Glioma Cells |
|
