|
| Status |
Public on Apr 20, 2015 |
| Title |
Twin5_1_G |
| Sample type |
genomic |
| |
|
| Source name |
whole blood 9
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Female
sample type: whole blood
disease state: HighBMI_HighLF
twin pair: Pair5_Twin1
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
High molecular weight DNA was extracted from whole blood using QIAamp DNA Mini kit (QIAGEN) following the QIAamp Spin Procedure.
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting
|
| Description |
bisulphite converted DNA from whole blood
Pair5_Twin1
|
| Data processing |
Idat files processed using minfi package in R.
Unmethylated and methylated signal intensities
|
| |
|
| Submission date |
Jan 31, 2013 |
| Last update date |
Apr 20, 2015 |
| Contact name |
Khadeeja Ismail |
| Organization name |
University of Helsinki
|
| Department |
Department of Public Health
|
| Street address |
Mannerheimintie 172
|
| City |
Helsinki |
| State/province |
Helsinki |
| ZIP/Postal code |
FI-00014 |
| Country |
Finland |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE43975 |
Epigenome-wide analysis of monozygotic twin pairs discordant for body mass index |
|
