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Status
Public on Jun 21, 2013
Title
Lymphoblast cell line
Sample type
genomic
Source name
Human lymphoblast cell line
Organism
Homo sapiens Characteristics
cell line: JWL
Extracted molecule
genomic DNA
Extraction protocol
tail lysis buffer, proteinase K digestion, phenol chloroform extraction, ethanol precipitation
Label
biotin
Label protocol
Label protocol as per manufacturer's instructions, Illumina
Hybridization protocol
Hyb protocol as per manufacturer's instructions, Illumina
Scan protocol
Scan protocol as per manufacturer's instructions, Illumina
Data processing
Raw data was read by the minfi package in R Development (2.12). The beta scores were calculated from the raw intensity values from each probe, no normalisation was performed.
Submission date
Jan 02, 2013
Last update date
Jun 21, 2013
Contact name
Nicholas C Wong
E-mail(s)
nick.wong@monash.edu Organization name
Monash University
Department
Monash Bioinformatics Platform, Central Clinical School
Street address
Wellington Road
City
Clayton
State/province
Victoria
ZIP/Postal code
3800
Country
Australia
Platform ID
GPL13534 Series (1)
GSE43226 Utility of HM450 BeadArray on Mouse Samples
Data table header descriptions ID_REF VALUE Average Beta
JWL.Detection Pval
Data table ID_REF VALUE JWL.Detection Pval cg00000029
0.8374805
0
cg00000108
0.8745716
0
cg00000109
0.683858
0
cg00000165
0.3740399
0
cg00000236
0.7520759
0
cg00000289
0.5589089
0
cg00000292
0.8622698
0
cg00000321
0.3322556
0
cg00000363
0.1256999
0
cg00000622
0.02215987
0
cg00000658
0.782041
0
cg00000714
0.4459769
0
cg00000721
0.8317618
0
cg00000734
0.09291323
0
cg00000769
0.02557791
0
cg00000807
0.6361024
0
cg00000884
0.7755235
0
cg00000905
0.2453096
0
cg00000924
0.4925796
0
cg00000948
0.7365731
0
485577 11012 Kbytes .Supplementary data files not provided Processed data included within Sample table
