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Status
Public on Jun 21, 2013
Title
Heart
Sample type
genomic
Source name
Heart Tissue from Mouse 88
Organism
Mus musculus Characteristics
strain: C57/B6
Extracted molecule
genomic DNA
Extraction protocol
tail lysis buffer, proteinase K digestion, phenol chloroform extraction, ethanol precipitation
Label
biotin
Label protocol
Label protocol as per manufacturer's instructions, Illumina
Hybridization protocol
Hyb protocol as per manufacturer's instructions, Illumina
Scan protocol
Scan protocol as per manufacturer's instructions, Illumina
Data processing
Raw data was read by the minfi package in R Development (2.12). The beta scores were calculated from the raw intensity values from each probe, no normalisation was performed.
Submission date
Jan 02, 2013
Last update date
Jun 21, 2013
Contact name
Nicholas C Wong
E-mail(s)
nick.wong@monash.edu Organization name
Monash University
Department
Monash Bioinformatics Platform, Central Clinical School
Street address
Wellington Road
City
Clayton
State/province
Victoria
ZIP/Postal code
3800
Country
Australia
Platform ID
GPL13534 Series (1)
GSE43226 Utility of HM450 BeadArray on Mouse Samples
Data table header descriptions ID_REF VALUE Average Beta
88_heart.Detection Pval
Data table ID_REF VALUE 88_heart.Detection Pval cg00000029
0.2827869
0.5783333
cg00000108
0.2331288
0.08833333
cg00000109
0.3339223
0.2433333
cg00000165
0.3804035
0.05666667
cg00000236
0.3780761
0.7983333
cg00000289
0.3568965
0.21
cg00000292
0.2445759
0.4716667
cg00000321
0.2498113
0
cg00000363
0.4729494
0.2233333
cg00000622
0.3846154
0.645
cg00000658
0.287169
0.5583333
cg00000714
0.1923077
0.05333333
cg00000721
0.2976939
0.6433333
cg00000734
0.2279534
0.1516667
cg00000769
0.1611111
0.035
cg00000807
0.2582418
0.2933333
cg00000884
0.2512195
0.935
cg00000905
0.2416303
0.06166667
cg00000924
0.2656716
0.06666667
cg00000948
0.3946629
0.04666667
485577 13689 Kbytes .Supplementary data files not provided Processed data included within Sample table
