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Sample GSM1056508 Query DataSets for GSM1056508
Status Public on Dec 18, 2013
Title CHC1386T
Sample type genomic
 
Source name CHC1386T
Organism Homo sapiens
Characteristics age: 44
Sex: F
pathological diagnosis: non dysplastic hepatocellular adenoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular adenoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13135
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 0.1169 0.9952 1047 16269 0.038 1.616 1.653 0.985
rs1000002 -0.627 0.9797 940 6091 0.043 0.616 0.659 0.956
rs10000023 -0.1818 0.0057 28511 1018 1.714 0.071 1.785 0.026
rs1000003 -0.1579 0.0163 17509 1097 1.086 0.084 1.17 0.049
rs10000030 -0.0937 0.9374 495 3510 0.028 0.366 0.393 0.952
rs10000037 -0.09 0.004 14017 479 0.936 0.027 0.963 0.019
rs10000041 -0.1591 2e-04 22312 776 1.488 0.053 1.541 0.023
rs10000042 -0.0637 0.4795 7224 5321 0.428 0.518 0.946 0.561
rs10000049 0.0382 0.4601 13301 7490 0.714 0.673 1.387 0.481
rs1000007 0.0367 0.0038 18936 585 1.264 0.035 1.298 0.018
rs10000073 -0.0867 0.005 18634 653 1.015 0.035 1.051 0.022
rs10000081 -0.0884 0.0192 14388 915 0.866 0.073 0.939 0.053
rs10000092 0.0155 0 12817 356 0.773 0.018 0.791 0.015
rs10000105 -0.0149 0.9901 1462 11329 0.062 1.038 1.1 0.962
rs10000119 0.1141 1 865 13202 0.032 1.31 1.342 0.984
rs10000124 0.0249 0.5274 17217 9217 1.021 0.899 1.92 0.46
rs10000154 0.1922 0 14842 442 0.894 0.025 0.919 0.018
rs1000016 0.0055 0.0162 10187 636 0.681 0.047 0.728 0.044
rs10000160 -0.0731 0.9931 859 7213 0.042 0.712 0.755 0.962
rs10000169 0.2447 0.491 12935 8559 0.765 0.837 1.602 0.528

Total number of rows: 730525

Table truncated, full table size 40677 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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