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Sample GSM1056504 Query DataSets for GSM1056504
Status Public on Dec 18, 2013
Title CHC1377T
Sample type genomic
 
Source name CHC1377T
Organism Homo sapiens
Characteristics age: 43
Sex: F
pathological diagnosis: non dysplastic hepatocellular adenoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular adenoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13135
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 0.2211 0.0015 28249 625 2.224 0.046 2.27 0.013
rs1000002 -0.5836 0.9777 753 4521 0.046 0.633 0.679 0.954
rs10000023 0.0841 0.9873 1646 12595 0.102 1.749 1.851 0.963
rs1000003 0.0698 0.0098 15814 850 1.281 0.088 1.369 0.044
rs10000030 -0.5119 0.8468 455 1737 0.036 0.251 0.287 0.91
rs10000037 -0.2201 0.9636 991 4830 0.075 0.716 0.791 0.934
rs10000041 -0.1125 0.0038 17423 629 1.53 0.061 1.591 0.025
rs10000042 -0.2067 0.9826 787 5061 0.052 0.7 0.752 0.953
rs10000049 0.123 0 17498 450 1.254 0.029 1.282 0.015
rs1000007 0.1878 0 16170 332 1.421 0.018 1.439 0.008
rs10000073 0.0597 0.0051 15694 516 1.124 0.039 1.163 0.022
rs10000081 -0.1826 0.4358 6450 3272 0.502 0.443 0.945 0.461
rs10000092 0.0966 0.4069 6420 2843 0.5 0.384 0.884 0.416
rs10000105 -0.1252 0.9708 1363 7279 0.08 0.945 1.025 0.946
rs10000119 0.0823 0.9999 730 9196 0.038 1.276 1.314 0.981
rs10000124 -0.0704 0.9956 776 9297 0.041 1.29 1.332 0.98
rs10000154 0.0299 0 10159 274 0.801 0.021 0.821 0.017
rs1000016 -0.2189 0 7076 130 0.622 0 0.622 0
rs10000160 -0.0293 0.9677 972 5181 0.066 0.717 0.783 0.942
rs10000169 0.0674 0 14673 435 1.156 0.037 1.193 0.021

Total number of rows: 730525

Table truncated, full table size 40624 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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