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Sample GSM1056489 Query DataSets for GSM1056489
Status Public on Dec 18, 2013
Title CHC954T
Sample type genomic
 
Source name CHC954T
Organism Homo sapiens
Characteristics age: 49
Sex: F
pathological diagnosis: non dysplastic hepatocellular adenoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular adenoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13135
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 0.1463 0.9996 768 18681 0.025 1.655 1.681 0.99
rs1000002 -0.0704 0.5713 7396 6139 0.523 0.542 1.065 0.512
rs10000023 -0.1099 0 25847 921 1.816 0.056 1.872 0.02
rs1000003 -0.1755 0 15155 921 1.094 0.059 1.154 0.034
rs10000030 -0.1605 0.9008 528 3449 0.034 0.337 0.372 0.935
rs10000037 -0.2902 0.985 784 7045 0.049 0.697 0.746 0.955
rs10000041 -0.1606 0.0074 18176 919 1.474 0.064 1.538 0.028
rs10000042 -0.0369 0 8737 847 0.616 0.062 0.678 0.064
rs10000049 0.1118 0 20155 649 1.244 0.028 1.272 0.014
rs1000007 -0.0549 0.5035 8294 7103 0.66 0.695 1.354 0.516
rs10000073 -0.1401 0 16026 534 0.989 0.022 1.011 0.014
rs10000081 -0.1602 0 12113 575 0.853 0.036 0.889 0.026
rs10000092 -0.0994 0.0087 9830 600 0.693 0.039 0.733 0.036
rs10000105 0.0207 0.9925 1293 13451 0.06 1.066 1.127 0.964
rs10000119 0.1871 0.9949 1015 15439 0.049 1.367 1.415 0.977
rs10000124 0.025 0.9967 919 15588 0.042 1.38 1.422 0.981
rs10000154 0.1347 0.4549 6874 5608 0.477 0.487 0.964 0.507
rs1000016 -0.1629 0.46 4144 3423 0.329 0.331 0.659 0.502
rs10000160 -0.0776 0.9773 927 7941 0.056 0.699 0.755 0.949
rs10000169 0.085 0.4968 9840 8663 0.679 0.757 1.436 0.534

Total number of rows: 730525

Table truncated, full table size 40412 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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