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Sample GSM1056485 Query DataSets for GSM1056485
Status Public on Dec 18, 2013
Title CHC761T
Sample type genomic
 
Source name CHC761T
Organism Homo sapiens
Characteristics age: 31
Sex: F
pathological diagnosis: non dysplastic hepatocellular adenoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular adenoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13135
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 0.0235 0.4283 19203 8838 1.335 0.854 2.189 0.362
rs1000002 0.122 0.556 8769 6138 0.615 0.605 1.221 0.495
rs10000023 -0.138 0.0051 25294 945 1.768 0.072 1.84 0.026
rs1000003 -0.1494 0.0011 15564 809 1.111 0.064 1.175 0.037
rs10000030 0.2252 0.918 576 4154 0.04 0.448 0.488 0.943
rs10000037 -0.0496 0.9905 816 7685 0.051 0.828 0.879 0.961
rs10000041 -0.1975 0.0041 18229 721 1.442 0.058 1.5 0.025
rs10000042 0.0103 1 568 8446 0.032 0.834 0.866 0.976
rs10000049 0.2495 0 22223 716 1.359 0.043 1.402 0.02
rs1000007 0.0951 0.4307 10350 6373 0.807 0.676 1.483 0.444
rs10000073 -0.2256 0.0083 15011 592 0.918 0.037 0.955 0.026
rs10000081 -0.0568 0.4524 7731 5105 0.536 0.498 1.034 0.477
rs10000092 0.0783 0.4456 6789 4162 0.471 0.406 0.877 0.453
rs10000105 0.1222 0.9918 1380 12951 0.066 1.143 1.209 0.963
rs10000119 0.202 0.9973 831 14037 0.045 1.384 1.429 0.979
rs10000124 -0.1442 0.983 1098 12292 0.066 1.212 1.277 0.966
rs10000154 0.145 0.4559 6929 5030 0.48 0.492 0.971 0.508
rs1000016 -0.2693 0.0204 7040 466 0.559 0.043 0.602 0.048
rs10000160 -0.3025 0.9682 858 6003 0.054 0.593 0.647 0.942
rs10000169 0.2746 0.4532 11846 8158 0.821 0.795 1.616 0.49

Total number of rows: 730525

Table truncated, full table size 40522 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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