NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM1056479 Query DataSets for GSM1056479
Status Public on Dec 18, 2013
Title CHC584T
Sample type genomic
 
Source name CHC584T
Organism Homo sapiens
Characteristics age: 24
Sex: F
pathological diagnosis: non dysplastic hepatocellular adenoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular adenoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13135
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 -0.0036 0 30043 520 1.916 0.024 1.94 0.008
rs1000002 -0.6497 0 10867 321 0.706 0.017 0.723 0.015
rs10000023 0.0994 0.5331 19686 13588 1.244 1.209 2.454 0.491
rs1000003 -0.1444 0 17174 875 1.116 0.063 1.179 0.036
rs10000030 0.1153 0.9367 546 4308 0.032 0.422 0.454 0.952
rs10000037 -0.4054 0.48 6407 3965 0.45 0.383 0.833 0.449
rs10000041 -0.1834 0 20752 620 1.475 0.041 1.516 0.018
rs10000042 -0.6837 0.9674 810 5504 0.046 0.497 0.543 0.941
rs10000049 -0.043 0 19895 511 1.119 0.024 1.143 0.014
rs1000007 0.0038 0 17780 181 1.264 0 1.264 0
rs10000073 -0.055 0 18659 495 1.049 0.023 1.072 0.014
rs10000081 -0.3744 0 11440 515 0.728 0.039 0.767 0.034
rs10000092 -0.1521 0.4387 6412 3837 0.405 0.342 0.747 0.447
rs10000105 0.1465 1 976 14562 0.04 1.183 1.223 0.979
rs10000119 0.2237 0.9979 923 15593 0.045 1.405 1.45 0.98
rs10000124 0.2728 0.9968 1021 18185 0.049 1.639 1.688 0.981
rs10000154 0.0325 0.4729 6862 5248 0.432 0.469 0.901 0.526
rs1000016 -0.4966 0.0108 6839 373 0.484 0.029 0.514 0.039
rs10000160 -0.5274 1 496 5805 0.026 0.524 0.55 0.969
rs10000169 0.2254 0 20186 667 1.286 0.046 1.332 0.023

Total number of rows: 730525

Table truncated, full table size 40185 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap