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Sample GSM1056477 Query DataSets for GSM1056477
Status Public on Dec 18, 2013
Title CHC543T
Sample type genomic
 
Source name CHC543T
Organism Homo sapiens
Characteristics age: 52
Sex: M
pathological diagnosis: frontier hepatocellular adenoma/carcinoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular adenoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13135
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 0.1059 0.9969 672 16485 0.032 1.606 1.638 0.987
rs1000002 -0.0854 1 575 9269 0.024 0.929 0.953 0.984
rs10000023 0.0803 0.5355 18549 12434 1.222 1.197 2.418 0.493
rs1000003 -0.0014 0.4459 11692 5957 0.791 0.586 1.376 0.406
rs10000030 -0.0206 0.5223 1428 2513 0.104 0.262 0.366 0.76
rs10000037 -0.0813 0.9928 803 7736 0.047 0.812 0.859 0.963
rs10000041 0.0421 0.3356 16381 5211 1.202 0.531 1.733 0.265
rs10000042 -0.1617 1 564 7572 0.031 0.738 0.769 0.973
rs10000049 0.4438 0.0033 25946 984 1.544 0.063 1.607 0.026
rs1000007 0.1526 0 18724 378 1.385 0.02 1.404 0.009
rs10000073 -0.0847 0 17213 497 1.024 0.027 1.051 0.017
rs10000081 -0.0732 0 13608 548 0.901 0.044 0.945 0.031
rs10000092 0.0435 0 12033 175 0.797 0.009 0.806 0.007
rs10000105 -0.0697 0.9948 1115 11306 0.054 1.004 1.057 0.966
rs10000119 0.2336 0.9949 921 14489 0.05 1.411 1.462 0.977
rs10000124 0.0967 1 659 14950 0.033 1.456 1.489 0.986
rs10000154 0.0758 0.9926 656 8460 0.036 0.825 0.861 0.972
rs1000016 -0.076 0.0102 8761 461 0.649 0.039 0.688 0.038
rs10000160 -0.0557 0.9786 932 7295 0.056 0.711 0.766 0.95
rs10000169 0.2222 0 19369 614 1.284 0.045 1.329 0.023

Total number of rows: 730525

Table truncated, full table size 40535 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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