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Sample GSM1056466 Query DataSets for GSM1056466
Status Public on Dec 18, 2013
Title CHC627T
Sample type genomic
 
Source name CHC627T
Organism Homo sapiens
Characteristics age: 31
Sex: F
pathological diagnosis: non dysplastic hepatocellular adenoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular adenoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13135
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 0.0016 0.9971 410 14388 0.03 1.494 1.524 0.987
rs1000002 -0.1408 0 11685 393 0.994 0.034 1.029 0.022
rs10000023 -0.0639 0.5493 13014 10630 1.073 1.1 2.173 0.508
rs1000003 -0.3625 0.0095 11166 680 0.95 0.065 1.015 0.044
rs10000030 0.5477 1 204 5371 0.015 0.61 0.625 0.984
rs10000037 -0.0487 0.5194 5779 4613 0.542 0.52 1.062 0.487
rs10000041 -0.2282 1 325 8399 0.025 0.952 0.978 0.983
rs10000042 -0.0108 0.5062 5213 5435 0.429 0.563 0.992 0.586
rs10000049 0.0074 1 649 11655 0.041 1.083 1.123 0.976
rs1000007 0.0936 1 399 10716 0.031 1.215 1.246 0.984
rs10000073 -0.1556 8e-04 13564 359 0.974 0.027 1.001 0.018
rs10000081 -0.0843 1 260 8051 0.019 0.836 0.855 0.986
rs10000092 -0.0343 1 428 6630 0.033 0.689 0.722 0.97
rs10000105 0.137 1 572 12688 0.035 1.179 1.213 0.981
rs10000119 0.136 1 323 12878 0.023 1.337 1.36 0.989
rs10000124 -0.0552 1 405 12622 0.03 1.311 1.34 0.986
rs10000154 0.1713 0 10769 179 0.889 0.016 0.905 0.011
rs1000016 -0.5998 0.0128 4776 265 0.45 0.029 0.478 0.041
rs10000160 -0.2467 1 306 6194 0.023 0.644 0.666 0.977
rs10000169 0.3528 0.4856 10080 8627 0.831 0.893 1.723 0.523

Total number of rows: 730525

Table truncated, full table size 39264 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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