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Sample GSM1056454 Query DataSets for GSM1056454
Status Public on Dec 18, 2013
Title CHC605T
Sample type genomic
 
Source name CHC605T
Organism Homo sapiens
Characteristics age: 48
Sex: F
pathological diagnosis: non dysplastic hepatocellular adenoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular adenoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13135
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 0.1514 1 260 15822 0.011 1.669 1.679 0.996
rs1000002 -0.2031 0.3843 7024 3423 0.62 0.367 0.986 0.34
rs10000023 0.0358 0.5347 14004 11074 1.186 1.159 2.346 0.493
rs1000003 -0.0599 8e-04 13325 733 1.183 0.068 1.25 0.036
rs10000030 -0.3215 0.8727 405 2509 0.036 0.294 0.33 0.922
rs10000037 -0.2525 0.5435 4684 4015 0.449 0.465 0.914 0.511
rs10000041 -0.0729 0 16355 561 1.585 0.051 1.636 0.02
rs10000042 -0.3402 1 339 6200 0.025 0.654 0.679 0.976
rs10000049 0.1998 0 17535 349 1.33 0.021 1.35 0.01
rs1000007 0.0739 0 13568 219 1.315 0.014 1.329 0.007
rs10000073 -0.1153 0.002 13193 407 1 0.03 1.03 0.019
rs10000081 -0.0233 0 11008 420 0.939 0.038 0.977 0.026
rs10000092 -0.0295 1 466 6532 0.035 0.689 0.724 0.968
rs10000105 -0.0858 1 675 10413 0.042 1.001 1.043 0.973
rs10000119 0.1145 1 498 12413 0.033 1.309 1.343 0.984
rs10000124 0.124 0.9986 586 14040 0.04 1.481 1.52 0.983
rs10000154 -0.2105 0 8119 43 0.693 0 0.693 0
rs1000016 -0.1502 0.0029 6432 297 0.623 0.03 0.653 0.03
rs10000160 -0.1215 0.9879 586 6496 0.045 0.685 0.731 0.958
rs10000169 0.1527 0 14412 410 1.229 0.035 1.264 0.018

Total number of rows: 730525

Table truncated, full table size 39618 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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