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Sample GSM1056453 Query DataSets for GSM1056453
Status Public on Dec 18, 2013
Title CHC917T
Sample type genomic
 
Source name CHC917T
Organism Homo sapiens
Characteristics age: 82
Sex: M
pathological diagnosis: hepatocellular carcinoma developed on an adenoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular carcinoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13135
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 0.2839 1 279 16095 0.013 1.828 1.842 0.995
rs1000002 0.3716 0.5885 7179 6395 0.686 0.755 1.441 0.53
rs10000023 0.0397 0.0038 21432 782 2.002 0.078 2.08 0.025
rs1000003 -0.0189 1 213 8630 0.011 1.026 1.037 0.993
rs10000030 -0.4231 0.9135 268 2214 0.026 0.284 0.311 0.941
rs10000037 -0.1928 0.9965 421 5907 0.039 0.755 0.794 0.967
rs10000041 -0.0453 0 15056 445 1.623 0.045 1.668 0.018
rs10000042 -0.0726 1 378 6918 0.031 0.787 0.817 0.975
rs10000049 0.2272 0 16503 228 1.361 0.014 1.375 0.006
rs1000007 0.1696 0.4936 7320 6307 0.783 0.799 1.582 0.507
rs10000073 6e-04 0 13278 257 1.095 0.019 1.114 0.011
rs10000081 -0.0904 0.5155 5134 4736 0.477 0.537 1.013 0.538
rs10000092 -0.2234 0.4919 3862 3143 0.359 0.357 0.716 0.498
rs10000105 -0.0901 1 513 9655 0.035 1.003 1.038 0.978
rs10000119 0.2735 1 337 12971 0.021 1.474 1.495 0.991
rs10000124 0.205 0.5102 12928 8815 1.201 0.995 2.196 0.44
rs10000154 0.1345 0 9236 197 0.864 0.019 0.883 0.014
rs1000016 -0.1917 0 5663 212 0.61 0.024 0.634 0.025
rs10000160 -0.1709 1 324 5943 0.026 0.676 0.703 0.975
rs10000169 0.1463 0 13091 362 1.223 0.035 1.259 0.018

Total number of rows: 730525

Table truncated, full table size 39376 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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