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Sample GSM1056446 Query DataSets for GSM1056446
Status Public on Dec 18, 2013
Title CHC575T
Sample type genomic
 
Source name CHC575T
Organism Homo sapiens
Characteristics age: 34
Sex: F
pathological diagnosis: non dysplastic hepatocellular adenoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular adenoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13135
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 -0.0621 1 176 10081 0.013 1.437 1.45 0.994
rs1000002 -0.3352 1 305 5335 0.023 0.778 0.802 0.981
rs10000023 -0.2919 0 18601 309 1.611 0.036 1.647 0.014
rs1000003 -0.2752 0 11551 390 1.028 0.047 1.076 0.029
rs10000030 0.1239 0.6092 1062 2032 0.102 0.314 0.415 0.8
rs10000037 -0.0951 0.4802 5742 3101 0.558 0.475 1.033 0.449
rs10000041 -0.1911 0 15005 360 1.462 0.045 1.507 0.02
rs10000042 0.0037 1 378 5828 0.031 0.831 0.861 0.977
rs10000049 0.1819 0 17023 316 1.306 0.029 1.336 0.014
rs1000007 0.0159 0 12878 209 1.255 0.023 1.278 0.012
rs10000073 -0.0891 0 13344 253 1.024 0.024 1.047 0.015
rs10000081 -0.2442 0 9254 298 0.801 0.039 0.839 0.031
rs10000092 -0.1192 0.4556 4695 2543 0.405 0.361 0.766 0.463
rs10000105 0.1116 1 540 8892 0.037 1.156 1.193 0.98
rs10000119 0.1129 1 336 9209 0.027 1.313 1.339 0.987
rs10000124 -0.0175 1 408 9428 0.033 1.344 1.377 0.985
rs10000154 0.1095 0 9670 257 0.837 0.033 0.869 0.025
rs1000016 -0.3754 0.0119 5404 235 0.526 0.033 0.559 0.04
rs10000160 -0.1066 1 259 5001 0.02 0.713 0.733 0.982
rs10000169 0.238 0.4841 8894 5792 0.769 0.822 1.591 0.521

Total number of rows: 730525

Table truncated, full table size 39257 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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