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Sample GSM1056436 Query DataSets for GSM1056436
Status Public on Dec 18, 2013
Title CHC1328T
Sample type genomic
 
Source name CHC1328T
Organism Homo sapiens
Characteristics age: 40
Sex: F
pathological diagnosis: non dysplastic hepatocellular adenoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular adenoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL13135
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs1000000 0.0417 1 316 10697 0.02 1.541 1.562 0.992
rs1000002 -0.1252 0.0054 10828 463 0.988 0.052 1.04 0.034
rs10000023 0.0379 0.5537 12947 8322 1.14 1.186 2.326 0.512
rs1000003 -0.1864 0.0068 11801 592 1.076 0.07 1.146 0.041
rs10000030 0.1932 0.9763 300 3026 0.022 0.463 0.485 0.97
rs10000037 0.0404 0.5267 5884 3692 0.569 0.558 1.127 0.494
rs10000041 -0.1504 0.4099 10032 3564 0.976 0.533 1.509 0.318
rs10000042 -0.6441 0.9822 471 3585 0.038 0.517 0.555 0.953
rs10000049 0.132 0.4442 9947 5351 0.777 0.697 1.474 0.465
rs1000007 -0.0737 0.4892 6875 4430 0.665 0.67 1.336 0.502
rs10000073 -0.0741 0.0151 12847 522 1.01 0.053 1.063 0.033
rs10000081 -0.0604 1e-04 10230 412 0.905 0.049 0.954 0.035
rs10000092 -0.1161 0.5204 4204 2792 0.369 0.399 0.768 0.524
rs10000105 0.1142 1 551 8779 0.034 1.16 1.194 0.981
rs10000119 0.0963 0.9937 610 8898 0.047 1.282 1.329 0.976
rs10000124 -0.051 0.9902 684 9033 0.054 1.301 1.355 0.974
rs10000154 -0.147 0 8028 168 0.71 0.017 0.726 0.015
rs1000016 -0.2737 0.0048 5871 246 0.571 0.029 0.6 0.032
rs10000160 -0.0124 1 345 5255 0.026 0.757 0.784 0.978
rs10000169 0.1447 0.4682 8360 5246 0.736 0.748 1.484 0.505

Total number of rows: 730525

Table truncated, full table size 39667 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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