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Sample GSM1056423 Query DataSets for GSM1056423
Status Public on Dec 18, 2013
Title CHC485T
Sample type genomic
 
Source name CHC485T
Organism Homo sapiens
Characteristics age: 32
Sex: F
pathological diagnosis: frontier hepatocellular adenoma/carcinoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular adenoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL6986
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs10000010-126_B_F_IFB1153208421:0 -0.1411 0.4686 2662 3072 0.421 0.458 0.879 0.526
rs10000023-126_B_F_IFB1153358872:0 -0.1794 1 484 9057 0.047 1.427 1.474 0.979
rs10000030-120_B_R_IFB1137703207:0 0.0991 0.4661 1373 3060 0.22 0.462 0.682 0.717
rs1000007-123_T_F_IFB1152225452:0 -0.0511 0 7092 138 0.937 0.011 0.947 0.007
rs10000092-123_T_R_IFB1153358875:0 -0.1078 0.6015 2928 3289 0.375 0.516 0.891 0.6
rs10000121-126_B_R_IFB1136471760:0 0.019 0.53 1535 2288 0.205 0.371 0.576 0.678
rs1000014-126_B_R_IFB1136184019:0 -0.0018 0.9965 715 9391 0.089 1.372 1.461 0.959
rs10000141-126_T_F_IFB1137734411:0 0.0823 1 191 6650 0.015 1.008 1.023 0.99
rs1000016-126_B_R_IFB1156563530:0 -0.1251 0 9185 153 1.362 0.009 1.371 0.004
rs10000169-119_T_R_IFB1135612081:0 -0.0061 0 7708 136 1.039 0.011 1.05 0.007
rs1000022-126_B_F_IFB1135126284:0 -0.0231 0 5740 43 0.876 0.003 0.88 0.002
rs10000272-126_T_R_IFB1136539894:0 0.0578 0 12714 107 1.742 0.01 1.752 0.004
rs10000282-121_T_R_IFB1136743500:0 -0.0166 0.9994 249 7793 0.024 1.136 1.16 0.987
rs10000300-126_T_R_IFB1152704058:0 -0.0174 1 205 4841 0.015 0.713 0.729 0.986
rs1000031-123_B_F_IFB1135583872:0 0.0418 0.456 9405 6828 1.26 0.965 2.225 0.416
rs1000032-126_B_R_IFB1136145093:0 0.139 1 214 9090 0.016 1.329 1.345 0.992
rs10000388-126_B_F_IFB1135932472:0 0.0936 0.4483 5185 4721 0.779 0.71 1.489 0.47
rs1000040-126_T_F_IFB1152704061:0 0.1124 0.545 3717 4748 0.535 0.697 1.233 0.583
rs1000041-126_T_F_IFB1153889147:0 0.1105 0.9957 571 9150 0.058 1.442 1.5 0.974
rs10000432-126_T_R_IFB1135756304:0 -0.3322 0.4818 1948 2755 0.257 0.391 0.648 0.629

Total number of rows: 370404

Table truncated, full table size 28664 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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