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Sample GSM1056422 Query DataSets for GSM1056422
Status Public on Dec 18, 2013
Title CHC477T
Sample type genomic
 
Source name CHC477T
Organism Homo sapiens
Characteristics age: 22
Sex: F
pathological diagnosis: non dysplastic hepatocellular adenoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular adenoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL6986
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs10000010-126_B_F_IFB1153208421:0 -0.1584 0 3268 23 0.804 0 0.804 0
rs10000023-126_B_F_IFB1153358872:0 -0.0432 0 9689 510 1.903 0.103 2.007 0.035
rs10000030-120_B_R_IFB1137703207:0 -0.1553 1 115 2988 0.012 0.662 0.674 0.989
rs1000007-123_T_F_IFB1152225452:0 0.0835 0 4770 83 1.031 0.007 1.039 0.005
rs10000092-123_T_R_IFB1153358875:0 -0.1481 0.9938 221 3234 0.032 0.724 0.755 0.972
rs10000121-126_B_R_IFB1136471760:0 -0.1138 0 1905 28 0.386 0.005 0.391 0.008
rs1000014-126_B_R_IFB1136184019:0 -0.1532 0.5081 3762 3630 0.993 0.911 1.904 0.473
rs10000141-126_T_F_IFB1137734411:0 -0.0454 1 152 4144 0.018 0.918 0.937 0.987
rs1000016-126_B_R_IFB1156563530:0 -0.0598 0 4993 149 1.418 0.017 1.435 0.008
rs10000169-119_T_R_IFB1135612081:0 -0.0822 0 4726 56 0.988 0.007 0.995 0.004
rs1000022-126_B_F_IFB1135126284:0 -0.0011 0.4672 1983 2040 0.46 0.522 0.982 0.54
rs10000272-126_T_R_IFB1136539894:0 -0.0276 0.5064 4327 3774 0.871 0.872 1.742 0.5
rs10000282-121_T_R_IFB1136743500:0 0.0356 0.9982 180 5081 0.026 1.177 1.203 0.986
rs10000300-126_T_R_IFB1152704058:0 0.0245 0.9564 300 2711 0.059 0.699 0.758 0.947
rs1000031-123_B_F_IFB1135583872:0 -0.0253 0.5099 5393 4830 1.119 1.006 2.126 0.466
rs1000032-126_B_R_IFB1136145093:0 -0.0304 0.9811 216 4581 0.035 1.159 1.195 0.981
rs10000388-126_B_F_IFB1135932472:0 -0.1887 0.0032 3912 126 1.1 0.021 1.121 0.012
rs1000040-126_T_F_IFB1152704061:0 -0.1845 0.4902 1859 2092 0.48 0.534 1.014 0.534
rs1000041-126_T_F_IFB1153889147:0 0.0199 1 256 6097 0.034 1.365 1.399 0.984
rs10000432-126_T_R_IFB1135756304:0 0.0512 1 208 3741 0.031 0.801 0.832 0.975

Total number of rows: 370404

Table truncated, full table size 28569 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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