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Sample GSM1056411 Query DataSets for GSM1056411
Status Public on Dec 18, 2013
Title CHC452T
Sample type genomic
 
Source name CHC452T
Organism Homo sapiens
Characteristics age: 18
Sex: M
pathological diagnosis: non dysplastic hepatocellular adenoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular adenoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL6986
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs10000010-126_B_F_IFB1153208421:0 0.1755 0.397 2184 1692 0.587 0.495 1.082 0.446
rs10000023-126_B_F_IFB1153358872:0 -0.0388 1 290 5882 0.031 1.583 1.614 0.987
rs10000030-120_B_R_IFB1137703207:0 -0.0923 1 119 2346 0.014 0.689 0.703 0.987
rs1000007-123_T_F_IFB1152225452:0 0.0274 0.0016 6181 153 0.985 0.016 1.001 0.01
rs10000092-123_T_R_IFB1153358875:0 -0.094 0.0011 4373 106 0.852 0.013 0.865 0.01
rs10000121-126_B_R_IFB1136471760:0 0.1781 0.5463 1155 1507 0.224 0.421 0.645 0.688
rs1000014-126_B_R_IFB1136184019:0 -0.0498 0.9925 598 6110 0.095 1.324 1.419 0.955
rs10000141-126_T_F_IFB1137734411:0 0.0454 0.0036 2937 140 0.811 0.032 0.843 0.025
rs1000016-126_B_R_IFB1156563530:0 0.1706 0 8510 224 1.661 0.023 1.683 0.009
rs10000169-119_T_R_IFB1135612081:0 0.1194 0.5021 2964 3523 0.547 0.794 1.341 0.616
rs1000022-126_B_F_IFB1135126284:0 -0.1065 0.5221 2182 2212 0.388 0.526 0.915 0.595
rs10000272-126_T_R_IFB1136539894:0 0.1506 0.0011 9023 128 1.851 0.018 1.869 0.006
rs10000282-121_T_R_IFB1136743500:0 -0.1235 0.9608 379 3768 0.072 1.02 1.092 0.955
rs10000300-126_T_R_IFB1152704058:0 -0.1309 0 3433 107 0.661 0.011 0.672 0.011
rs1000031-123_B_F_IFB1135583872:0 -0.1864 1 173 5578 0.013 1.266 1.279 0.993
rs1000032-126_B_R_IFB1136145093:0 -0.117 0.9951 206 5095 0.021 1.105 1.126 0.988
rs10000388-126_B_F_IFB1135932472:0 0.1479 0.0028 8332 206 1.389 0.026 1.415 0.012
rs1000040-126_T_F_IFB1152704061:0 -0.3495 0 4188 152 0.809 0.02 0.829 0.016
rs1000041-126_T_F_IFB1153889147:0 -0.0646 0.9859 461 4722 0.068 1.269 1.337 0.966
rs10000432-126_T_R_IFB1135756304:0 0.154 0.9982 329 4561 0.038 0.856 0.894 0.972

Total number of rows: 370404

Table truncated, full table size 28770 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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