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Sample GSM1056404 Query DataSets for GSM1056404
Status Public on Dec 18, 2013
Title CHC375T
Sample type genomic
 
Source name CHC375T
Organism Homo sapiens
Characteristics age: 46
Sex: F
pathological diagnosis: non dysplastic hepatocellular adenoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular adenoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL6986
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs10000010-126_B_F_IFB1153208421:0 -0.0064 0.4971 3234 3465 0.44 0.529 0.969 0.558
rs10000023-126_B_F_IFB1153358872:0 -0.0135 0.0032 12580 656 1.929 0.122 2.051 0.04
rs10000030-120_B_R_IFB1137703207:0 -0.0311 1 122 4709 0.008 0.728 0.736 0.993
rs1000007-123_T_F_IFB1152225452:0 0.0054 0.4911 3109 3354 0.503 0.67 1.173 0.59
rs10000092-123_T_R_IFB1153358875:0 -0.0442 0.0026 5755 109 0.88 0.016 0.896 0.012
rs10000121-126_B_R_IFB1136471760:0 -0.1478 1 105 2550 0.01 0.547 0.557 0.988
rs1000014-126_B_R_IFB1136184019:0 0 0
rs10000141-126_T_F_IFB1137734411:0 -0.0402 1 171 5992 0.013 0.926 0.939 0.991
rs1000016-126_B_R_IFB1156563530:0 -0.049 0.0032 8720 249 1.417 0.028 1.445 0.013
rs10000169-119_T_R_IFB1135612081:0 -0.0498 0.5137 2927 3389 0.476 0.713 1.189 0.625
rs1000022-126_B_F_IFB1135126284:0 0.0259 0.4756 2952 2683 0.462 0.541 1.002 0.55
rs10000272-126_T_R_IFB1136539894:0 -0.0303 0 10223 70 1.641 0.008 1.648 0.003
rs10000282-121_T_R_IFB1136743500:0 -0.0625 1 183 6389 0.014 1.107 1.121 0.992
rs10000300-126_T_R_IFB1152704058:0 -0.0782 0.5239 2298 2485 0.33 0.437 0.767 0.589
rs1000031-123_B_F_IFB1135583872:0 0.0443 1 253 7014 0.022 1.483 1.505 0.991
rs1000032-126_B_R_IFB1136145093:0 -0.0377 0.5378 2432 4697 0.347 0.821 1.168 0.745
rs10000388-126_B_F_IFB1135932472:0 -0.0043 0.4881 4367 3696 0.688 0.713 1.402 0.511
rs1000040-126_T_F_IFB1152704061:0 -0.0297 0 6852 186 1.01 0.024 1.034 0.015
rs1000041-126_T_F_IFB1153889147:0 0.1425 1 320 7200 0.033 1.488 1.521 0.986
rs10000432-126_T_R_IFB1135756304:0 -0.1111 1 231 3564 0.024 0.719 0.743 0.979

Total number of rows: 370404

Table truncated, full table size 28491 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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