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Sample GSM1056401 Query DataSets for GSM1056401
Status Public on Dec 18, 2013
Title CHC368T
Sample type genomic
 
Source name CHC368T
Organism Homo sapiens
Characteristics age: 49
Sex: F
pathological diagnosis: non dysplastic hepatocellular adenoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular adenoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL6986
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs10000010-126_B_F_IFB1153208421:0 -0.1262 0.531 2265 2623 0.382 0.505 0.887 0.588
rs10000023-126_B_F_IFB1153358872:0 -0.1647 0.0131 13085 771 1.717 0.134 1.851 0.05
rs10000030-120_B_R_IFB1137703207:0 -0.2427 0.6146 783 2260 0.132 0.439 0.57 0.815
rs1000007-123_T_F_IFB1152225452:0 -0.1143 0 6599 98 0.897 0.009 0.906 0.006
rs10000092-123_T_R_IFB1153358875:0 0.0821 0.4263 4457 2424 0.576 0.463 1.039 0.431
rs10000121-126_B_R_IFB1136471760:0 -0.0959 1 178 2787 0.016 0.56 0.576 0.982
rs1000014-126_B_R_IFB1136184019:0 0.0429 0.9963 744 7825 0.093 1.415 1.508 0.958
rs10000141-126_T_F_IFB1137734411:0 -0.081 0.4886 2161 3058 0.379 0.592 0.971 0.637
rs1000016-126_B_R_IFB1156563530:0 0.0678 0 9328 199 1.547 0.02 1.567 0.008
rs10000169-119_T_R_IFB1135612081:0 -0.0353 0.5212 3723 4184 0.474 0.724 1.198 0.631
rs1000022-126_B_F_IFB1135126284:0 -0.1231 0 6838 32 0.818 0.003 0.821 0.002
rs10000272-126_T_R_IFB1136539894:0 -0.1712 2e-04 10982 114 1.483 0.012 1.495 0.005
rs10000282-121_T_R_IFB1136743500:0 -0.0606 1 146 5360 0.009 1.112 1.121 0.995
rs10000300-126_T_R_IFB1152704058:0 -0.0977 1 146 3727 0.008 0.68 0.688 0.992
rs1000031-123_B_F_IFB1135583872:0 -0.0368 0.9981 333 8062 0.029 1.399 1.428 0.987
rs1000032-126_B_R_IFB1136145093:0 0.0684 1 223 6982 0.017 1.263 1.28 0.991
rs10000388-126_B_F_IFB1135932472:0 -0.0165 0.4764 4020 3191 0.694 0.693 1.387 0.499
rs1000040-126_T_F_IFB1152704061:0 0.1204 0 7478 109 1.135 0.011 1.146 0.006
rs1000041-126_T_F_IFB1153889147:0 0.0513 1 502 7177 0.048 1.388 1.436 0.978
rs10000432-126_T_R_IFB1135756304:0 -0.0994 0.478 2288 2613 0.305 0.456 0.761 0.625

Total number of rows: 370404

Table truncated, full table size 28564 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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