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Sample GSM1056394 Query DataSets for GSM1056394
Status Public on Dec 18, 2013
Title CHC343T
Sample type genomic
 
Source name CHC343T
Organism Homo sapiens
Characteristics age: 45
Sex: F
pathological diagnosis: non dysplastic hepatocellular adenoma
Extracted molecule genomic DNA
Extraction protocol DNA was extracted from 3 mm3 frozen tumor samples using high salt precipitation (as described in PMID: 3344216).
Label C-Bio and A-DNP
Label protocol standard Illumina protocol
 
Hybridization protocol standard Illumina protocol
Scan protocol standard Illumina protocol
Description Hepatocellular adenoma
Data processing standard Illumina protocol. Log R Ratios exported from the Beadstudio software.
 
Submission date Dec 20, 2012
Last update date Dec 18, 2013
Contact name Eric Letouzé
E-mail(s) Eric.letouze@inserm.fr
Organization name Ligue Contre Le Cancer
Lab Centre de Recherche des Cordeliers
Street address 15 rue de l'école de médecine
City Paris
ZIP/Postal code 75006
Country France
 
Platform ID GPL6986
Series (2)
GSE43092 SNP data from 126 hepatocellular adenomas and carcinomas
GSE43273 Genome-scale methylome and SNP profiling of hepatocellular adenomas and carcinomas

Data table header descriptions
ID_REF This column corresponds to the ID column of the reference platform
VALUE Log R Ratios exported from the Beadstudio software
B.Allele.Freq
X.Raw
Y.Raw
X
Y
R
Theta

Data table
ID_REF VALUE B.Allele.Freq X.Raw Y.Raw X Y R Theta
rs10000010-126_B_F_IFB1153208421:0 -0.0471 0.5049 2437 2569 0.422 0.52 0.942 0.566
rs10000023-126_B_F_IFB1153358872:0 0.0275 0 11242 532 1.999 0.108 2.107 0.034
rs10000030-120_B_R_IFB1137703207:0 -0.0761 0.5323 974 2281 0.167 0.458 0.625 0.778
rs1000007-123_T_F_IFB1152225452:0 0.0453 0.4954 3220 3366 0.513 0.695 1.208 0.595
rs10000092-123_T_R_IFB1153358875:0 -0.0432 0.0025 4972 95 0.881 0.016 0.896 0.011
rs10000121-126_B_R_IFB1136471760:0 -0.0437 0 2205 0 0.409 0 0.409 0
rs1000014-126_B_R_IFB1136184019:0 0.1475 1 497 7239 0.069 1.533 1.602 0.971
rs10000141-126_T_F_IFB1137734411:0 -0.0462 1 163 4576 0.015 0.921 0.936 0.99
rs1000016-126_B_R_IFB1156563530:0 -0.0816 0.0013 7562 196 1.39 0.024 1.413 0.011
rs10000169-119_T_R_IFB1135612081:0 -0.0555 0.002 5747 125 0.994 0.023 1.017 0.014
rs1000022-126_B_F_IFB1135126284:0 -0.0077 1 171 3823 0.02 0.872 0.892 0.985
rs10000272-126_T_R_IFB1136539894:0 -0.0744 0.5322 4339 3683 0.798 0.866 1.664 0.526
rs10000282-121_T_R_IFB1136743500:0 -0.2806 1 85 4381 0 0.96 0.961 1
rs10000300-126_T_R_IFB1152704058:0 0.0256 0.5393 2055 2211 0.345 0.477 0.822 0.602
rs1000031-123_B_F_IFB1135583872:0 0.0619 0 11950 97 2.075 0.011 2.087 0.003
rs1000032-126_B_R_IFB1136145093:0 -0.0564 1 186 5466 0.017 1.158 1.174 0.991
rs10000388-126_B_F_IFB1135932472:0 0.2163 1 165 6460 0.012 1.289 1.3 0.994
rs1000040-126_T_F_IFB1152704061:0 -0.1247 0.5607 2612 2780 0.441 0.6 1.041 0.597
rs1000041-126_T_F_IFB1153889147:0 -0.079 0.9902 424 5619 0.06 1.26 1.32 0.97
rs10000432-126_T_R_IFB1135756304:0 -0.0995 0.6278 1486 2564 0.234 0.528 0.763 0.734

Total number of rows: 370404

Table truncated, full table size 28534 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
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