|
| Status |
Public on Jan 14, 2013 |
| Title |
PBMC012 |
| Sample type |
genomic |
| |
|
| Source name |
Peripheral blood mononuclear cells
|
| Organism |
Homo sapiens |
| Characteristics |
gender: Female
health state: Healthy donor
cell type: Peripheral blood mononuclear cells
genotype/variation: Non-mutant donor
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA extraction
|
| Label |
Cy3, Cy5
|
| Label protocol |
Standard Illumina labelling protocol
|
| |
|
| Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
|
| Data processing |
The intensities of the images are extracted using GenomeStudio (2010.3) Methylation module (1.8.5) software. Methylation score of each CpG is represented as beta value.
|
| |
|
| Submission date |
Dec 12, 2012 |
| Last update date |
Jan 14, 2013 |
| Contact name |
Manel Esteller |
| Organization name |
IDIBELL
|
| Department |
PEBC
|
| Lab |
Cancer Epigenetics
|
| Street address |
Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
|
| City |
L'Hospitalet de Llobregat |
| State/province |
Barcelona |
| ZIP/Postal code |
08908 |
| Country |
Spain |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE42865 |
Genome-wide DNA methylation profiling of Progeria and Werner syndrome patients |
|
