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Sample GSM1052420 Query DataSets for GSM1052420
Status Public on Jan 14, 2013
Title PBMC011
Sample type genomic
 
Source name Peripheral blood mononuclear cells
Organism Homo sapiens
Characteristics gender: Male
health state: Healthy donor
cell type: Peripheral blood mononuclear cells
genotype/variation: Non-mutant donor
Extracted molecule genomic DNA
Extraction protocol genomic DNA extraction
Label Cy3, Cy5
Label protocol Standard Illumina labelling protocol
 
Hybridization protocol Bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
Scan protocol Arrays were imaged using High Scan SQ using standard recommended Illumina scanner setting
Data processing The intensities of the images are extracted using GenomeStudio (2010.3) Methylation module (1.8.5) software. Methylation score of each CpG is represented as beta value.
 
Submission date Dec 12, 2012
Last update date Jan 14, 2013
Contact name Manel Esteller
Organization name IDIBELL
Department PEBC
Lab Cancer Epigenetics
Street address Hospital Duran i Reynals Av. Gran Via s/n km, 2.7
City L'Hospitalet de Llobregat
State/province Barcelona
ZIP/Postal code 08908
Country Spain
 
Platform ID GPL13534
Series (1)
GSE42865 Genome-wide DNA methylation profiling of Progeria and Werner syndrome patients

Data table header descriptions
ID_REF
VALUE Average Beta

Data table
ID_REF VALUE
cg00000029 0.6425583
cg00000108 0.9324542
cg00000109 0.9392725
cg00000165 0.1811239
cg00000236 0.8155416
cg00000289 0.6891437
cg00000292 0.8748325
cg00000321 0.2931609
cg00000363 0.3637909
cg00000622 0.01064958
cg00000658 0.8221769
cg00000714 0.249798
cg00000721 0.9116281
cg00000734 0.08956852
cg00000769 0.05551881
cg00000807 0.7824619
cg00000884 0.8544584
cg00000905 0.0521137
cg00000924 0.5666716
cg00000948 0.8305767

Total number of rows: 485577

Table truncated, full table size 9969 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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