|
Status |
Public on Aug 01, 2013 |
Title |
HCT116 AZA_2 |
Sample type |
RNA |
|
|
Source name |
HCT116
|
Organism |
Homo sapiens |
Characteristics |
cell line: HCT116 treatment: AZA
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was extracted with Trizol reagent, followed by clean-up and DNase I treatment and Quality control experiment performed
|
Label |
Cy3
|
Label protocol |
Standard as recommended by Illumina
|
|
|
Hybridization protocol |
Standard Illumina hybridization protocol
|
Scan protocol |
Standard Illumina scanning protocol
|
Description |
colorectal carcinoma cell line
|
Data processing |
The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
|
|
|
Submission date |
Oct 17, 2012 |
Last update date |
Aug 01, 2013 |
Contact name |
Xiaojing Yang |
E-mail(s) |
xiaojiny@usc.edu
|
Phone |
(323)865-0740
|
Organization name |
USC/Norris Comprehensive Cancer Center
|
Street address |
1441 Eastlake Ave, Room 7336
|
City |
Los Angeles |
State/province |
CA |
ZIP/Postal code |
90033 |
Country |
USA |
|
|
Platform ID |
GPL10558 |
Series (2) |
GSE41676 |
Combinatorial treatment of DNMT inhibitor and LSD1 inhibitor results in cell growth inhibition and reexpression of epigenetically silenced genes (gene expression) |
GSE41754 |
Combinatorial treatment of DNMT inhibitor and LSD1 inhibitor results in cell growth inhibition and reexpression of epigenetically silenced genes |
|