|
| Status |
Public on Jul 15, 2013 |
| Title |
genomic DNA from central chondrosarcoma_Sample20 |
| Sample type |
genomic |
| |
|
| Source name |
central chondrosarcoma
|
| Organism |
Homo sapiens |
| Characteristics |
age at presentation: 81
gender: male
tumor grade: G2
idh status: MUT
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
genomic DNA was extracted and purified using QiaAMP DNA Mini Kit according to standard instructions
|
| Label |
Cy5 and Cy3
|
| Label protocol |
Standard Illumina Protocol
|
| |
|
| Hybridization protocol |
bisulphite converted DNA was amplified, fragmented and hybridised to Illumina Infinium Human Methylation450 Beadchip using standard Illumina protocol
|
| Scan protocol |
Arrays were imaged using standard recommended Illumina scanner settings
|
| Description |
tumour sample
|
| Data processing |
GenomeStudio software v2011.1. The non_normalized.txt file contains unmethylated (SignalA) and methylated (SignalB) signal intensities.
|
| |
|
| Submission date |
Sep 13, 2012 |
| Last update date |
Jul 15, 2013 |
| Contact name |
Paul Guilhamon |
| Organization name |
SickKids
|
| Street address |
686 Bay Street
|
| City |
Toronto |
| State/province |
ON |
| ZIP/Postal code |
M5G0A4 |
| Country |
Canada |
| |
|
| Platform ID |
GPL13534 |
| Series (1) |
| GSE40853 |
Meta-analysis of IDH-mutant cancers identifies EBF1 as an interaction partner for TET2 |
|
