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Series GSE97096 Query DataSets for GSE97096
Status Public on Mar 28, 2017
Title Oncogenic BRAF disrupts thyroid morphogenesis and function via Twist expression
Organism Danio rerio
Experiment type Expression profiling by high throughput sequencing
Summary Thyroid cancer is common, yet the sequence of alterations that promote tumor formation are incompletely understood. Here we describe a novel model of thyroid carcinoma in zebrafish that reveals temporal changes due to BRAFV600E. Through the use of real-time in vivo imaging we observe disruption in thyroid follicle structure that occurs early in thyroid development. Combinatorial treatment using BRAF and MEK inhibitors reversed the developmental effects induced by BRAFV600E. Adult zebrafish expressing BRAFV600E in thyrocytes developed invasive carcinoma. We identified a gene expression signature from zebrafish thyroid cancer that is predictive of disease free survival in patients with papillary thyroid cancer. Gene expression studies nominated TWIST2 as a key effector downstream of BRAF. Using CRISPR/Cas9 to genetically inactivate a TWIST2 orthologue, we suppressed the effects of BRAFV600E and restored thyroid morphology and hormone synthesis. These data suggest that expression of TWIST2 plays a role in an early step of BRAFV600E-mediated transformation.
 
Overall design 3 embryo tg-TOM (tg:TdTomato), 3 embryo tg-BRAFV600E-TOM, 3 adult tg-TOM and 5 adult tg-BRAFV600E-TOM biological replicates were sequenced. Strains with tg:TdTomato express the TdTomato fluorophore under control of the zebrafish thyroglobulin promoter (tg).
 
Contributor(s) Houvras Y, Anelli V
Citation(s) 28350298
Submission date Mar 27, 2017
Last update date Mar 11, 2020
Contact name Yariv Houvras
Organization name Weill Cornell Medical College
Department Surgery
Street address 1300 York Ave
City New York
State/province NY
ZIP/Postal code 10065
Country USA
 
Platforms (1)
GPL14875 Illumina HiSeq 2000 (Danio rerio)
Samples (14)
GSM2551524 BRAF_1
GSM2551525 BRAF_2
GSM2551526 BRAF_3
Relations
BioProject PRJNA380660
SRA SRP102546

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE97096_counts.txt.gz 518.6 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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