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Series GSE93769 Query DataSets for GSE93769
Status Public on Sep 22, 2017
Title Tumor suppression via inhibition of SWI/SNF complex-dependent NF-kappaB activation [HeLaS3 subset]
Organism Homo sapiens
Experiment type Expression profiling by array
Summary The transcription factor NF-kappaB is constitutively activated in many epithelial tumors but few NF-kappaB inhibitors are suitable for cancer therapy because of the broad biological effects of NF-κB. We previously reported that the d4 family (DPF1, DPF2, DPF3a/b) function as adaptor proteins linking NF-kappaB with the SWI/SNF complex. Here, we demonstrate that in epithelial tumor cell lines, exogenous expression of the highly conserved N-terminal 84-amino acid region of either DPF2 or DPF3a/b (designated “CT1”) has stronger inhibitory effects on anchorage-independent growth than single knockdown of any d4 protein, indicating that CT1 can function as an efficient dominant-negative mutant of the entire d4 family. By proximity ligation assays, CT1 was further shown to retain full function as an adaptor. Microarray analysis categorized NF-kappaB target genes by their CT1 sensitivity. Among CT1-sensitive genes, IL-6 was shown to strongly contribute to the anchorage-independent growth. Finally, exogenous CT1 expression efficiently suppressed tumor formation in a mouse xenograft model, suggesting that the d4 protein family could be a promising cancer therapy target.
TNF-alpha induced gene expression in HeLaS3 cells was measured at 0 and 1 hour after the treatment of TNF-alpha (10 ng/ml). Beforehand, the cells were transduced with either lentivirus vector expressing a dominant-negative mutant of d4-family protein (named CT1) or with empty vector (control).
 
Overall design Kazuyoshi,Kobayashi
Web link https://0-www-nature-com.brum.beds.ac.uk/articles/s41598-017-11806-9
 
Contributor(s) Hiramatsu H, Nakamura S, Kobayashi K, Haraguchi T, Iba H
Citation(s) 28924147
Submission date Jan 18, 2017
Last update date Feb 20, 2018
Contact name Kazuyoshi Kobayashi
E-mail(s) jgdfd547@gmail.com
Organization name Chiba University
Department Medical Mycology Research Center (MMRC)
Street address 1-8-1 Inohana, Chuo-ku
City Chiba
ZIP/Postal code 260-8673
Country Japan
 
Platforms (1)
GPL21185 Agilent-072363 SurePrint G3 Human GE v3 8x60K Microarray 039494 [Probe Name Version]
Samples (4)
GSM2461813 HeLaS3_EV_m
GSM2461814 HeLaS3_EV_p
GSM2461815 HeLaS3_DPF3_CT1_m
This SubSeries is part of SuperSeries:
GSE93770 Tumor suppression via inhibition of SWI/SNF complex-dependent NF-kappaB activation
Relations
BioProject PRJNA362338

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE93769_RAW.tar 49.8 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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