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| Status |
Public on Jul 21, 2017 |
| Title |
Genome-wide expression profiling of whole of uhrf1 mutant zebrafish compared to WT siblings at 120 hpf |
| Organism |
Danio rerio |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
The goal of this study is to compare gene expression levels in whole uhrf1 mutant larvae to phenotypically normal siblings.
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| Overall design |
Larvae were segregated by phenotype on 5 dpf and 10 larvae with the mutant phenotype and phenotypically normal siblings were pooled. RNA was extracted. Libraries were prepared according to Illumina Truseq RNA sample prep kit, version 2, followed by Ribo-Zero Gold treatment. Larvae from two separate clutches were analyzed.
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| |
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| Contributor(s) |
Zhang C, Chernyavskaya Y, Edepli KS |
| Citation(s) |
28698226 |
| Submission date |
Dec 08, 2016 |
| Last update date |
Nov 04, 2021 |
| Contact name |
Kirsten Sadler Edepli |
| E-mail(s) |
kirsten.edepli@nyu.edu
|
| Phone |
971568327587
|
| Organization name |
New York University Abu Dhabi
|
| Department |
Biology
|
| Street address |
PO Box 129188
|
| City |
Abu Dhabi |
| State/province |
Abu Dhabi |
| ZIP/Postal code |
000 |
| Country |
United Arab Emirates |
| |
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| Platforms (1) |
| GPL14875 |
Illumina HiSeq 2000 (Danio rerio) |
|
| Samples (4)
|
| GSM2419875 |
phenotypically normal siblings of uhrf1-hi272 mutants-1 |
| GSM2419876 |
phenotypically normal siblings of uhrf1-hi272 mutants-2 |
| GSM2419877 |
uhrf1-hi272 mutant-1 |
|
| Relations |
| BioProject |
PRJNA356694 |
| SRA |
SRP094752 |
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