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Series GSE87862 Query DataSets for GSE87862
Status Public on May 16, 2017
Title Mov10 in developing brain suppresses retroelements and regulates neuronal development and function
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary RNA helicase MOV10 participates in RNA-induced gene silencing, nonsense-mediated decay and suppression of retrotransposition in cultured cells. We describe a critical role for MOV10 in early postnatal brain, where there is an ~40 fold increase in MOV10 protein levels along with a nucleo-cytoplasmic localization pattern. The isolation of MOV10-associated RNAs from this stage showed a preponderance of retrotransposon encoded RNAs along with messenger RNAs. Furthermore, reduced MOV10 expression led to an increase in genomic L1 levels in P2 brain. We show that MOV10 likely suppresses retrotransposition by binding to the LINE1 reverse transcriptase and blocking cDNA synthesis. MOV10 also binds cytoskeletal mRNAs and is required for normal neurite outgrowth in both Neuro2A and cultured hippocampal neurons. Finally, standard MOV10 levels in brain are required for normal mouse behavior. We provide the first evidence of a role for MOV10 in retrotransposon control in brain and in neuronal development and function.
 
Overall design The analysis includes 8 samples. The wildtype Neuro2a cells have 2 replicates each of differentiated and undifferentiated cells.The remaining 4 are CRISPR-Cas Knockout lines for MOV10 that are have also been differentiated or left undifferentiated. These samples are also in replicates.
 
Contributor(s) Ceman S, Seimetz J
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Submission date Oct 12, 2016
Last update date May 15, 2019
Contact name Joseph Seimetz
E-mail(s) seimetz1@illinois.edu
Organization name University of Illinois Urbana-Champaign
Department Biochemistry
Lab Kalsotra
Street address 506 South Mathews Ave.
City Urbana
State/province Illinois
ZIP/Postal code 61801
Country USA
 
Platforms (1)
GPL21103 Illumina HiSeq 4000 (Mus musculus)
Samples (8)
GSM2341988 KO_D_n_1
GSM2341989 KO_D_n_2
GSM2341990 KO_UD_n_1
Relations
BioProject PRJNA347915
SRA SRP091426

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE87862_gene_exp.diff.gz 9.1 Mb (ftp)(http) DIFF
GSE87862_genes.fpkm_tracking.gz 2.1 Mb (ftp)(http) FPKM_TRACKING
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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