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Series GSE85416 Query DataSets for GSE85416
Status Public on May 01, 2017
Title Systematic identification and characterization of long non-coding RNAs in zebrafish through RNA-Seq
Organism Danio rerio
Experiment type Expression profiling by high throughput sequencing
Summary We sequenced mRNA from embryonic heart of zebrafish larvae 4 days post fertilization, adult heart of 6-month-old WIK fish, and adult muscle of adult fish consisting of both fast-twitch and slow-twitch fibers.
 
Overall design Examination of mRNA and long noncoding RNA levels in embryonic heart, adult heart, and adult muscle tissues
 
Contributor(s) Xu X, Zhang Y
Citation(s) 28455512
Submission date Aug 10, 2016
Last update date May 15, 2019
Contact name Yuji Zhang
E-mail(s) yuzhang@som.umaryland.edu
Phone 410-706-8523
Organization name University of Maryland
Street address 660 W. Redwood Street
City Baltimore
State/province MD
ZIP/Postal code 21201
Country USA
 
Platforms (1)
GPL14875 Illumina HiSeq 2000 (Danio rerio)
Samples (9)
GSM2266454 embryonic_heart_0
GSM2266455 embryonic_heart_2
GSM2266456 embryonic_heart_1
Relations
BioProject PRJNA338400
SRA SRP081209

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE85416_isoform_exp.diff.gz 9.1 Mb (ftp)(http) DIFF
GSE85416_isoforms.fpkm_table.txt.gz 3.6 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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