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| Status |
Public on Mar 08, 2017 |
| Title |
DNA Methylation profile for male SD Rats with and without traumatic brain injury (TBI) by RNA-Seq, batch2 |
| Organism |
Rattus norvegicus |
| Experiment type |
Methylation profiling by high throughput sequencing
|
| Summary |
To investigate the effects of TBI on affecting DNA methylations in the WBC of male SD rats by RRBS.
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| Overall design |
Male Sprague–Dawley (SD) rats weighing between 200 and 240 g were housed in cages and maintained in environmentally-controlled rooms (22–24C) with a 12-h light/dark cycle. After acclimatization for 1 week on standard rat chow, the rats were subjected to TBI by fluid percussion injury (FPI), sham surgery or non-procedure control. At 1 week post-surgery the rats were tested for learning abilities, and then were sacrificed by decapitation. The fresh tissues including the hippocampus and white blood cells (WBC) were collected, processed, flash frozen, and stored at -70°C for later transcriptome and DNA methylome sequencing experiments. All experiments were performed in accordance with the United States National Institutes of Health Guide for the Care and Use of Laboratory Animals and were approved by the University of California at Los Angeles Chancellor’s Animal Research Committee.
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| |
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| Contributor(s) |
Meng Q, Yang X, Gomez-Pinilla F |
| Citation(s) |
28174132 |
| Submission date |
Jun 27, 2016 |
| Last update date |
May 15, 2019 |
| Contact name |
Xia Yang |
| E-mail(s) |
xyang123@ucla.edu
|
| Organization name |
UCLA
|
| Department |
IBP
|
| Street address |
2000 Terasaki Life Sciences Bldg, 610 Charles E. Young Drive East
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095 |
| Country |
USA |
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| Platforms (1) |
| GPL18694 |
Illumina HiSeq 2500 (Rattus norvegicus) |
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| Samples (12)
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| Relations |
| BioProject |
PRJNA326975 |
| SRA |
SRP077328 |
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