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Series GSE80220 Query DataSets for GSE80220
Status Public on Jan 25, 2017
Title Enhanced transcriptomic responses in the Pacific salmon louse Lepeophtheirus salmonis oncorhynchi to the non-native Atlantic Salmon Salmo salar suggests increased parasite fitness
Organism Lepeophtheirus salmonis
Experiment type Expression profiling by array
Summary This study investigates host-specific gene expression of the Pacific salmon lice, Lepeophtheirus salmonis oncorhynchii, while parasitizing a resistant host (Coho salmon), two susceptible hosts (Atlantic salmon, Sockeye salmon), and a population with-held hosts (starved), over 48 hrs.
 
Overall design Adult female sea lice were allowed to attach to three different host populations (Atlantic, Coho and Sockeye salmon), or were kept in incubation chambers devoid of hosts (starved). At 0, 24, and 48 hours, individual lice were sampled for subsequent RNA analysis.
 
Contributor(s) Braden LM, Sutherland BJ, Koop BF, Jones SM
Citation(s) 28137252
Submission date Apr 12, 2016
Last update date May 01, 2017
Contact name Ben F Koop
E-mail(s) bkoop@uvic.ca
Phone (250) 472-4067
Organization name The University of Victoria
Department Biology
Lab Centre for Biomedical Research
Street address PO Box 3020 STN CSC
City Victoria
State/province BC
ZIP/Postal code V8W 3N5
Country Canada
 
Platforms (1)
GPL15566 GiLS Lepeophtheirus salmonis
Samples (84)
GSM2121096 Female_CO48_rep1
GSM2121097 Female_CO48_rep2
GSM2121098 Female_SK24_rep1
Relations
BioProject PRJNA318295

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE80220_RAW.tar 754.7 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table

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