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Series GSE78031 Query DataSets for GSE78031
Status Public on Sep 01, 2016
Title microRNA profiling of Sprague Dawley organs
Organism Rattus norvegicus
Experiment type Non-coding RNA profiling by high throughput sequencing
Summary We performed deep sequencing of the miRNAs present in ~20 toxicologically relevant tissues in Sprague Dawley rats and used three independent analysis of the data to determine which miRNAs are tissue specific and tissue enriched.
 
Overall design We performed deep sequencing of miRNAs in 21 organs from 5 male Sprague Dawley rats and 23 organs from 5 female Sprague Dawley rats.
 
Contributor(s) Smith AT, Fisher C, Calley JN
Citation(s) 27576563, 30453895
Submission date Feb 17, 2016
Last update date May 15, 2019
Contact name Aaron Thomas Smith
E-mail(s) smithat@lilly.com
Phone 3172774712
Organization name Eli Lilly
Department Investigative Toxicology
Street address Lilly Corporate Center
City Indianapolis
State/province IN
ZIP/Postal code 46285
Country USA
 
Platforms (1)
GPL14844 Illumina HiSeq 2000 (Rattus norvegicus)
Samples (458)
GSM2064712 Animal10_Female_Kidney_Homogenate_re-extract_Sequencing batch 2
GSM2064713 Animal4_Male_Pancreas_Reextract_Sequencing batch 2
GSM2064714 Animal7_Female_Cortex_Homogenate_re-extract_Sequencing batch 4
Relations
BioProject PRJNA312384
SRA SRP070453

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE78031_combined_isomiR_level_counts.txt.gz 12.9 Mb (ftp)(http) TXT
GSE78031_combined_miR_level_counts.txt.gz 745.5 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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