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Series GSE77392 Query DataSets for GSE77392
Status Public on Jul 29, 2017
Title SAMHD1 degrades nascent DNA at stalled Forks to promote replication restart
Organism Homo sapiens
Experiment type Other
Summary SAMHD1 is a triphosphohydrolase and a 3'-5' exonuclease that restricts HIV-1 infection in non-cycling cells. It is also mutated in the Aicardi-Goutières Syndrome (AGS) and in different cancers, including chronic lymphotic leukemia. We report herre that SAMHD1 localizes to DNA replication foci during S phase suggesting that it is involved in DNA synthesis. Using microarray analysis, we examine the replication timing program an we show that SAMHD1 regulates the fork progression but also the replication timing program.
 
Overall design Two experimen tal condition : shRNA LUC cells (control) versus shRNA SAMHD1 cells
 
Contributor(s) Lin Y, Cadoret J, Pasero P
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Submission date Jan 29, 2016
Last update date Jul 30, 2017
Contact name Jean-Charles Cadoret
E-mail(s) jean-charles.cadoret@ijm.fr
Organization name CNRS/ Université de Paris
Street address 15 rue hélène Brion
City Paris
ZIP/Postal code 75013
Country France
 
Platforms (1)
GPL10123 Agilent-022060 SurePrint G3 Human CGH Microarray 4x180K (Feature Number version)
Samples (2)
GSM2051262 shRNA scramble replication timing 1
GSM2051263 shRNA SAMHD1 replication timing 1
Relations
BioProject PRJNA310214

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE77392_RAW.tar 105.7 Mb (http)(custom) TAR (of CSV)
Processed data included within Sample table
Processed data provided as supplementary file

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