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Series GSE72985 Query DataSets for GSE72985
Status Public on Mar 23, 2016
Title Accelerated cartilage differentiation distinguishes the lower from the upper vertebrate face
Organism Danio rerio
Experiment type Expression profiling by high throughput sequencing
Summary Distinct shaping of the upper versus lower facial skeleton is essential for function of the vertebrate jaw and middle ear, yet the cellular mechanisms by which this occurs have remained unclear. Here, we show that Endothelin1 (Edn1) signaling accelerates mesenchymal condensation and subsequent cartilage formation in the lower face through antagonism of Jagged-Notch signaling and Prrx1 transcription factors. A genomic analysis of facial skeletal precursors in mutants and overexpression embryos reveals that Jagged-Notch signaling represses genes that are strongly induced as pharyngeal arch neural crest-derived cells begin skeletal differentiation. In wild types, initial Jagged-Notch repression dorsally ensures that barx1+ condensations and cartilage differentiation occur first in ventral-intermediate zones of the pharyngeal arches. Reduced Jagged-Notch signaling results in an expansion of pre-cartilage condensations in the upper face, with loss of barx1 partially restoring dorsal cartilage shapes in jag1b mutants. Further, by studying new mutants for zebrafish prrx1a and prrx1b, we find that Prrx1 genes function in parallel to Jagged-Notch signaling to restrict the formation of dorsal barx1+ pre-cartilage condensations. Consistently, combined losses of jag1b and prrx1a/b robustly rescue ventral barx1+ condensations and lower facial cartilage development in edn1 mutants. Together, our work suggests that Edn1 works through parallel inhibition of Jagged-Notch and Prrx1 pathways to promote an earlier and more extensive establishment of cartilage condensations in the lower face.
 
Overall design We performed RNAseq on FACS-sorted neural crest-derived pharyngeal arch cells (fli1a:GFP; sox10:DsRed double positive) from wild-type embryos at 3 different stages (20, 28, and 36 hours post fertilization) and embryos with altered levels of Edn1 and Notch signaling (edn1 mutants and hsp70I:Gal4; UAS:Edn1 transgenics; jag1b mutants, dibenzazepine-treated embryos, and hsp70I:Gal4; UAS:NICD transgenics. We also sequenced RNA from heat-shocked UAS:Edn1+ and hsp70I:Gal4+ transgenics and jag1b+/+ controls.
 
Contributor(s) Mork L, Askary A, Zuniga E, Balczerski B, Bump P, Nichols JT, Crump GJ
Citation(s) 27058748
Submission date Sep 14, 2015
Last update date May 15, 2019
Contact name Gage DeKoeyer Crump
E-mail(s) gcrump@usc.edu
Phone 3234421750
Organization name University of Southern California
Department Broad CIRM Center for Regenerative Medicine and Stem Cell Research
Lab Crump Lab
Street address 1425 San Pablo St, BCC403
City Los Angeles
State/province California
ZIP/Postal code 90033
Country USA
 
Platforms (2)
GPL14875 Illumina HiSeq 2000 (Danio rerio)
GPL20828 Illumina NextSeq 500 (Danio rerio)
Samples (13)
GSM1876250 WT-36hpf-fli1a
GSM1876251 WT-36hpf-sox10
GSM1876252 WT-36hpf-DP
Relations
BioProject PRJNA295533
SRA SRP063659

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE72985_GeneRPKM.csv.gz 1.4 Mb (ftp)(http) CSV
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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