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| Status |
Public on May 18, 2015 |
| Title |
Evolutionary comparison reveals that diverging CCCTC-binding factor (CTCF) sites are signatures of ancestral topological associating domains borders |
| Organisms |
Strongylocentrotus purpuratus; Danio rerio; Mus musculus |
| Experiment type |
Other
|
| Summary |
Comparison of conserved TAD boundaries reveals that diverging CTCF sites is an evolutionary conserved signature associated with TAD borders
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| Overall design |
4C-seq samples for six gene family promoters in different samples: E9.5 and E14.5 mouse embryos ; 24hpf, 48hpf, 80%epiboly and Dome zebrafish embryos ; 48hpf S.purpuratus embryos
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| Contributor(s) |
Gómez-Marín C, Tena JJ, Domínguez-Acemel R, Naranjo S, Maeso I, De la Calle-Mustienes E, Beccari L, Vielmas E, López-Mayorga M, Bovolenta P, Carvajal JJ, Gómez-Skarmeta JL |
| Citation(s) |
26034287 |
| Submission date |
Mar 13, 2015 |
| Last update date |
Feb 23, 2022 |
| Contact name |
Carlos Gómez |
| E-mail(s) |
cgommar@hotmail.com
|
| Organization name |
Centro Andaluz de Biologia del Desarrollo
|
| Street address |
Crta Utrera km 1
|
| City |
Seville |
| State/province |
Seville |
| ZIP/Postal code |
41013 |
| Country |
Spain |
| |
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| Platforms (3) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
| GPL14875 |
Illumina HiSeq 2000 (Danio rerio) |
| GPL19892 |
Illumina HiSeq 2000 (Strongylocentrotus purpuratus) |
|
| Samples (63)
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| Relations |
| BioProject |
PRJNA278402 |
| SRA |
SRP056206 |
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