|
| Status |
Public on Jan 31, 2015 |
| Title |
DNA methylation profiling in chondrocyte dedifferentiation in vitro |
| Organism |
Homo sapiens |
| Experiment type |
Methylation profiling by genome tiling array
|
| Summary |
Genome wide DNA methylation profiling of different passages of human articular chondrocytes treated with 5-azacytidine. The Illumina Infinium 450k Human DNA methylation Beadchip v1.2 was used to obtain DNA methylation profiles across approximately 27,578 CpGs.Samples included 6 different passages of human articular chondrocytes with 5-azacytidine treatment, 6 different passages without 5-azacytidine treatment,
|
| |
|
| Overall design |
Bisulphite converted DNA from the 12 samples were hybridised to the Illumina Infinium 450k Human Methylation Beadchip v1.2
|
| |
|
| Contributor(s) |
Duan L, Wang D |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
Jan 30, 2015 |
| Last update date |
Mar 22, 2019 |
| Contact name |
Li Duan |
| E-mail(s) |
whjy2004@aliyun.com
|
| Organization name |
Shenzhen Second People's Hospital
|
| Department |
Department of Orthopedics
|
| Lab |
Key Lab of Shenzhen Tissue Engineering
|
| Street address |
Futian District, Sungang WestRoad 3002#
|
| City |
Shenzhen |
| State/province |
Guangdong |
| ZIP/Postal code |
518000 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL13534 |
Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482) |
|
| Samples (12)
|
| GSM1598104 |
genomic DNA from human articular chondrocytes 1 |
| GSM1598105 |
genomic DNA from human articular chondrocytes 2 |
| GSM1598106 |
genomic DNA from human articular chondrocytes 3 |
| GSM1598107 |
genomic DNA from human articular chondrocytes 4 |
| GSM1598108 |
genomic DNA from human articular chondrocytes 5 |
| GSM1598109 |
genomic DNA from human articular chondrocytes 6 |
| GSM1598110 |
genomic DNA from human articular chondrocytes 7 |
| GSM1598111 |
genomic DNA from human articular chondrocytes 8 |
| GSM1598112 |
genomic DNA from human articular chondrocytes 9 |
| GSM1598113 |
genomic DNA from human articular chondrocytes 10 |
| GSM1598114 |
genomic DNA from human articular chondrocytes 11 |
| GSM1598115 |
genomic DNA from human articular chondrocytes 12 |
|
| Relations |
| BioProject |
PRJNA274123 |
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