|
| Status |
Public on Mar 18, 2015 |
| Title |
Dynamic landscape of RNA structures in vivo reveals principles of post-transcriptional regulation |
| Organism |
Mus musculus |
| Experiment type |
Other
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
25799993 |
| Submission date |
Dec 15, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Ryan Alexander Flynn |
| E-mail(s) |
raflynn@stanford.edu
|
| Organization name |
Stanford University
|
| Street address |
380 Roth Way, Room 265
|
| City |
Stanford |
| State/province |
CA |
| ZIP/Postal code |
94305 |
| Country |
USA |
| |
|
| Platforms (3) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
|
| Samples (12)
|
| GSM1464037 |
v65 polyA(+) icSHAPE DMSO Biological Replicate 1 |
| GSM1464038 |
v65 polyA(+) icSHAPE DMSO Biological Replicate 2 |
| GSM1464039 |
v65 polyA(+) icSHAPE in vitro NAI-N3 Biological Replicate 1 |
| GSM1464040 |
v65 polyA(+) icSHAPE in vitro NAI-N3 Biological Replicate 2 |
| GSM1464041 |
v65 polyA(+) icSHAPE in vivo NAI-N3 Biological Replicate 1 |
| GSM1464042 |
v65 polyA(+) icSHAPE in vivo NAI-N3 Biological Replicate 2 |
| GSM1565484 |
METTL3 KO polyA(+) icSHAPE DMSO Biological Replicate 1 |
| GSM1565485 |
METTL3 KO polyA(+) icSHAPE DMSO Biological Replicate 2 |
| GSM1565486 |
METTL3 KO polyA(+) icSHAPE NAI-N3 Biological Replicate 1 |
| GSM1565487 |
METTL3 KO polyA(+) icSHAPE NAI-N3 Biological Replicate 2 |
| GSM1565488 |
HuR iCLIP Biological replicate 1 |
| GSM1565489 |
HuR iCLIP Biological replicate 2 |
|
| This SuperSeries is composed of the following SubSeries: |
| GSE60034 |
Dynamic landscape of RNA structures in vivo reveals principles of post-transcriptional regulation [icSHAPE] |
| GSE64168 |
Dynamic landscape of RNA structures in vivo reveals principles of post-transcriptional regulation [iCLIP] |
|
| Relations |
| BioProject |
PRJNA270325 |
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