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Series GSE62362 Query DataSets for GSE62362
Status Public on Oct 16, 2014
Title Interstrain differences in the severity of liver injury induced by a choline- and folate-deficient diet in mice are associated with dysregulation of genes involved in lipid metabolism.
Organism Mus musculus
Experiment type Expression profiling by array
Summary Nonalcoholic fatty liver disease (NAFLD) is a major health problem and a leading cause of chronic liver disease in the United States and developed countries. In humans, genetic factors greatly influence individual susceptibility to NAFLD. The goals of this study were to compare the magnitude of interindividual differences in the severity of liver injury induced by methyl-donor deficiency among individual inbred strains of mice and to investigate the underlying mechanisms associated with the variability. Feeding mice a choline- and folate-deficient diet for 12 wk caused liver injury similar to NAFLD. The magnitude of liver injury varied among the strains, with the order of sensitivity being A/J ≈ C57BL/6J ≈ C3H/HeJ < 129S1/SvImJ ≈ CAST/EiJ < PWK/PhJ < WSB/EiJ. The interstrain variability in severity of NAFLD liver damage was associated with dysregulation of genes involved in lipid metabolism, primarily with a down-regulation of the peroxisome proliferator receptor α (PPARα)-regulated lipid catabolic pathway genes. Markers of oxidative stress and oxidative stress-induced DNA damage were also elevated in the livers but were not correlated with severity of liver damage. These findings suggest that the PPARα-regulated metabolism network is one of the key mechanisms determining interstrain susceptibility and severity of NAFLD in mice.
 
Overall design Male A/J, C3H/HeJ and WSB/EiJ inbred mice were maintained on either control or choline- and folate-deficient (CFD) diets for 12 weeks. Gene expression profiles in the livers from control mice and mice fed a CFD-diet were investigated.
 
Contributor(s) Tryndyak V, de Conti A, Han T, Fuscoe JC, Rusyn I, Beland FA, Pogribny IP
Citation(s) 22872676, 27103143
Submission date Oct 15, 2014
Last update date Oct 07, 2019
Contact name Volodymyr Tryndyak
E-mail(s) volodymyr.tryndyak@fda.hhs.gov
Phone 870-543-7545
Organization name US-FDA National Center for Toxicological Research
Department Division of Biochemical Toxicology
Street address 3900 NCTR Rd
City Jefferson
ZIP/Postal code 72079
Country USA
 
Platforms (1)
GPL13912 Agilent-028005 SurePrint G3 Mouse GE 8x60K Microarray (Feature Number version)
Samples (24)
GSM1525737 AJ-mice_liver_control_rep1
GSM1525738 AJ-mice_liver_control_rep2
GSM1525739 AJ-mice_liver_control_rep3
Relations
BioProject PRJNA263912

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE62362_Normalized_data_with_probename.txt.gz 8.7 Mb (ftp)(http) TXT
GSE62362_RAW.tar 290.2 Mb (http)(custom) TAR (of TXT)
Processed data included within Sample table
Processed data are available on Series record

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