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| Status |
Public on Jan 06, 2015 |
| Title |
ATAC-seq data in mouse and zebrafish limbs |
| Organisms |
Danio rerio; Mus musculus |
| Experiment type |
Other
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| Summary |
Assay for Transposable Accessible Chromatin (ATAC) reveals a genome wide view of areas of open chromatin at very high resolution, which are often associated with regulatory activity.
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| Overall design |
The ATAC-seq technology uses a Tn5 transposase loaded with nex-generation sequencing primers in order to simultaneously fragment areas of open chromatin and ligate adapters.
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| Contributor(s) |
Gehrke A, Schneider I, Tena JJ, Gómez-Marín C, Nakamura T, Chandran M, de la Calle-Mustienes E, Braasch I, Postlethwait J, Gómez-Skarmeta JL, Shubin N |
| Citation(s) |
25535365 |
| Submission date |
Sep 03, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Juan J. Tena |
| E-mail(s) |
jjtenagu@upo.es
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| Organization name |
CABD/CSIC
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| Street address |
Univ. Pablo Olavide, Ctra. Utrera km1
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| City |
Sevilla |
| ZIP/Postal code |
41013 |
| Country |
Spain |
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| Platforms (2) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
| GPL14875 |
Illumina HiSeq 2000 (Danio rerio) |
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| Samples (3) |
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| Relations |
| BioProject |
PRJNA260176 |
| SRA |
SRP046269 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE61065_RAW.tar |
2.9 Gb |
(http)(custom) |
TAR (of BW) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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