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| Status |
Public on Oct 01, 2014 |
| Title |
Genome-wide DNA methylation map of Zebrafish liver |
| Organism |
Danio rerio |
| Experiment type |
Methylation profiling by high throughput sequencing
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| Summary |
Using a pooled (n=10) zebrafish liver DNA, we generated base-resolution DNA methylation maps to document epigenetic landscape in zebrafish genome.
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| Overall design |
Here we generated single-nucleotide resoultion DNA methylation map of zebrafish pooled liver sample using Reduced Representation Bisulfite Sequencing (RRBS)
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| Contributor(s) |
Chatterjee A, Stockwell PA, Horsfield JA, Morison IM, Nakagawa S |
| Citation(s) |
26484126, 23975027 |
| Submission date |
Jul 30, 2014 |
| Last update date |
May 15, 2019 |
| Contact name |
Aniruddha Chatterjee |
| E-mail(s) |
aniruddha.chatterjee@otago.ac.nz
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| Phone |
+64-210701558
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| Organization name |
University of Otago
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| Department |
Pathology
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| Lab |
Epigenetics and Disease
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| Street address |
270 Great king Street
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| City |
Dunedin |
| State/province |
Otago |
| ZIP/Postal code |
9054 |
| Country |
New Zealand |
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| Platforms (1) |
| GPL14875 |
Illumina HiSeq 2000 (Danio rerio) |
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| Samples (1) |
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| Relations |
| BioProject |
PRJNA257062 |
| SRA |
SRP045089 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE59917_RAW.tar |
1.9 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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