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Series GSE55712 Query DataSets for GSE55712
Status Public on Mar 09, 2014
Title Genome wide methylation profliling of pediatric glioblastomas.
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary Genome wide DNA methylation profiling of WT, K27M, G34R and IDH1glioblastomas
 
Overall design Bisulphite converted DNA from 38 WT, 28 K27M, 17 IDH1 AND 15 G34R samples hybridised to the Illumina 450k Human Methylation Beadchip
 
Contributor(s) Fontebasso AM, Papillon-Cavanagh S, Schwartzentruber J, Nikbakht H, Gerges N, Fiset P, Bechet D, Faury D, De Jay N, Ramkissoon L, Corcoran A, Jones DT, Sturm D, Johann P, Tomita T, Goldman S, Nagib M, Bendel A, Goumnerova L, Bowers DC, Leonard JR, Rubin JB, Alden T, Browd S, Geyer JR, Jallo G, Cohen K, Gupta N, Prados MD, Carret A, Ellezam B, Crevier L, Klekner A, Bognar L, Hauser P, Garami M, Myseros J, Dong Z, Siegel PM, Malkin H, Ligon A, Albrecht S, Pfister SM, Ligon KL, Majewski J, Jabado N, Kieran MW
Citation(s) 24705250
Submission date Mar 08, 2014
Last update date Mar 22, 2019
Contact name Simon Papillon-Cavanagh
Organization name McGill University
Department Human Genetics
Lab Majewski
Street address 740 Dr Penfield
City Montrea
State/province Quebec
ZIP/Postal code H3A0G1
Country Canada
 
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (98)
GSM1342166 genomic DNA from patient cHGA-HGG10
GSM1342167 genomic DNA from patient cHGA-HGG14
GSM1342168 genomic DNA from patient cHGA-HGG39
Relations
BioProject PRJNA240635

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE55712_RAW.tar 183.1 Mb (http)(custom) TAR
GSE55712_average_beta.txt.gz 383.4 Mb (ftp)(http) TXT
GSE55712_signals_matrix.tsv.gz 234.3 Mb (ftp)(http) TSV
Processed data included within Sample table
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